View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_low_13 (Length: 319)

Name: NF5840_low_13
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_low_13
NF5840_low_13
[»] chr4 (10 HSPs)
chr4 (185-303)||(54442269-54442387)
chr4 (91-193)||(54441895-54441983)
chr4 (174-217)||(16959142-16959185)
chr4 (164-217)||(8117181-8117234)
chr4 (198-227)||(20650790-20650819)
chr4 (184-217)||(44569207-44569240)
chr4 (174-226)||(8080532-8080584)
chr4 (173-213)||(23084113-23084153)
chr4 (174-226)||(23454806-23454858)
chr4 (164-224)||(53937749-53937809)
[»] chr5 (8 HSPs)
chr5 (174-228)||(34449447-34449501)
chr5 (133-216)||(34598338-34598421)
chr5 (174-212)||(4178085-4178123)
chr5 (127-217)||(19104306-19104396)
chr5 (174-227)||(21063900-21063953)
chr5 (163-216)||(33894682-33894735)
chr5 (173-213)||(25913790-25913830)
chr5 (173-217)||(32128327-32128371)
[»] chr8 (3 HSPs)
chr8 (174-223)||(32875196-32875245)
chr8 (138-224)||(6078915-6079001)
chr8 (173-209)||(42149483-42149519)
[»] chr6 (4 HSPs)
chr6 (173-217)||(5039426-5039470)
chr6 (138-217)||(34187780-34187859)
chr6 (174-223)||(12462448-12462497)
chr6 (164-217)||(26683130-26683183)
[»] chr2 (3 HSPs)
chr2 (138-214)||(1722146-1722222)
chr2 (174-225)||(45070679-45070730)
chr2 (167-220)||(4831577-4831630)
[»] chr3 (5 HSPs)
chr3 (151-217)||(47186405-47186471)
chr3 (174-219)||(3135765-3135810)
chr3 (184-217)||(42236068-42236101)
chr3 (164-216)||(160538-160590)
chr3 (174-226)||(19114072-19114124)
[»] scaffold0041 (1 HSPs)
scaffold0041 (174-227)||(28540-28593)
[»] chr7 (2 HSPs)
chr7 (132-217)||(1870511-1870596)
chr7 (174-226)||(44405992-44406044)
[»] scaffold0384 (1 HSPs)
scaffold0384 (173-217)||(7300-7344)
[»] chr1 (2 HSPs)
chr1 (184-224)||(10555591-10555631)
chr1 (174-230)||(36016981-36017037)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 54442269 - 54442387
Alignment:
Q  185 tatttataataaccaaaaacatatttaacccttgattttattatattttcatgcaaaacttagaggcgcaatacatcacagtagattcctggtttttgaa 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54442269 tatttataataaccaaaaacatatttaacccttaattttattatattttcatgcaaaacttagaggcgcaatacatcacagtagattcctggtttttgaa 54442368  T
Q  285 acatccgataggcaaagaa 303  Q
    ||||| |||||||||||||    
T  54442369 acatctgataggcaaagaa 54442387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 54441895 - 54441983
Alignment:
Q  91 gactgaaaaacaagatcttaagcggtaatgagaaacttttaaaagagtaaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatattta 190  Q
    ||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||    
T  54441895 gactgaaaaacaagatcttaagcggtaatgagaaactttt--------------cgaaacaaaattttaataagacttaaagaaaaagttgtaatattta 54441980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 16959185 - 16959142
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  16959185 aaaagttgatatatttataagaaccaaaaacatatttaaccctt 16959142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 8117234 - 8117181
Alignment:
Q  164 gacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    |||| |||||||||||||  |||||||||   ||||||||||||||||||||||    
T  8117234 gactaaaagaaaaagttggtatatttatagggaccaaaaacatatttaaccctt 8117181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 20650790 - 20650819
Alignment:
Q  198 caaaaacatatttaacccttgattttatta 227  Q
    ||||||||||||||||||||||||||||||    
T  20650790 caaaaacatatttaacccttgattttatta 20650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 44569240 - 44569207
Alignment:
Q  184 atatttataataaccaaaaacatatttaaccctt 217  Q
    |||||||||| |||||||||||||||||||||||    
T  44569240 atatttataagaaccaaaaacatatttaaccctt 44569207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 8080532 - 8080584
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttatt 226  Q
    ||||||||  |||||||||   |||||||||||||||||||||| ||||||||    
T  8080532 aaaagttgatatatttatagggaccaaaaacatatttaacccttaattttatt 8080584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 23084113 - 23084153
Alignment:
Q  173 aaaaagttgtaatatttataataaccaaaaacatatttaac 213  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  23084113 aaaaagttggaatatttataaggaccaaaaacatatttaac 23084153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 23454806 - 23454858
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttatt 226  Q
    ||||||||  |||||||||  ||||||||||||||||||||||| ||| ||||    
T  23454806 aaaagttgacatatttataggaaccaaaaacatatttaaccctttattctatt 23454858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 53937749 - 53937809
Alignment:
Q  164 gacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaacccttgatttta 224  Q
    |||| ||| |||||||||  ||||||||||  || ||||||||||||||||||| ||||||    
T  53937749 gactaaaataaaaagttggtatatttataaggacaaaaaacatatttaaccctttatttta 53937809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 34449447 - 34449501
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttattat 228  Q
    ||||||||  |||||||||   |||||||||||||||||||||||||||||||||    
T  34449447 aaaagttggtatatttatagggaccaaaaacatatttaacccttgattttattat 34449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 34598338 - 34598421
Alignment:
Q  133 aagagtaaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccct 216  Q
    |||| ||||||| |||  |||||||||| |||||| ||| |||||||||  |||||||||   |||||||| ||||||||||||    
T  34598338 aagactaaaagttgaaggaaaattttaaaaagactaaaacaaaaagttgacatatttatagggaccaaaaagatatttaaccct 34598421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 4178123 - 4178085
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaa 212  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  4178123 aaaagttgaaatatttataagaaccaaaaacatatttaa 4178085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 19104306 - 19104396
Alignment:
Q  127 ttttaaaagagtaaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    |||||| ||| ||||||| |||  ||||||||| |  |||| |||  ||||||||  |||||||||  |||||||||||||||||||||||    
T  19104306 ttttaagagactaaaagttgaaggaaaattttagtgggactaaaacgaaaagttggtatatttataggaaccaaaaacatatttaaccctt 19104396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 21063900 - 21063953
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttatta 227  Q
    ||||||||  ||||||||| | ||||||||||||||||||||||  ||||||||    
T  21063900 aaaagttgacatatttatagtgaccaaaaacatatttaacccttatttttatta 21063953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 33894682 - 33894735
Alignment:
Q  163 agacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccct 216  Q
    ||||| ||| |||||||||  |||||||||  ||||||||||||||||||||||    
T  33894682 agactaaaacaaaaagttgatatatttataggaaccaaaaacatatttaaccct 33894735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 25913790 - 25913830
Alignment:
Q  173 aaaaagttgtaatatttataataaccaaaaacatatttaac 213  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  25913790 aaaaagttgatatatttataaaaaccaaaaacatatttaac 25913830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 32128327 - 32128371
Alignment:
Q  173 aaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    |||||||||  ||| |||||| |||||||||||||||||||||||    
T  32128327 aaaaagttggtatacttataagaaccaaaaacatatttaaccctt 32128371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 32875245 - 32875196
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgatttt 223  Q
    ||||||||  |||||||||| |||||||||||||||||||||| ||||||    
T  32875245 aaaagttgacatatttataagaaccaaaaacatatttaaccctagatttt 32875196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 6079001 - 6078915
Alignment:
Q  138 taaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaacccttgatttta 224  Q
    ||||||| |||| |||||||||   ||||| |||| ||||||||  |||||||||   |||||||||||||||||| ||| ||||||    
T  6079001 taaaagttgaaagaaaattttagagagactaaaaggaaaagttgacatatttatagggaccaaaaacatatttaactcttcatttta 6078915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 42149519 - 42149483
Alignment:
Q  173 aaaaagttgtaatatttataataaccaaaaacatatt 209  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  42149519 aaaaagttggaatatttataagaaccaaaaacatatt 42149483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 5039426 - 5039470
Alignment:
Q  173 aaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    |||||||||  |||||||||| |||||||||||||||||||||||    
T  5039426 aaaaagttggtatatttataagaaccaaaaacatatttaaccctt 5039470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 34187859 - 34187780
Alignment:
Q  138 taaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    ||||||||||||| ||||||||    |||| ||| |||||||||  |||||||||  |||| ||||||||||||||||||    
T  34187859 taaaagtcgaaacgaaattttagagggactaaaataaaaagttgatatatttataggaaccgaaaacatatttaaccctt 34187780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 12462448 - 12462497
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgatttt 223  Q
    |||| |||| ||||||||||  |||||||| |||||||||||||||||||    
T  12462448 aaaatttgttatatttataaggaccaaaaagatatttaacccttgatttt 12462497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 26683130 - 26683183
Alignment:
Q  164 gacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    |||| ||| |||||||||| |||||||||   ||||||||||||||||||||||    
T  26683130 gactaaaacaaaaagttgttatatttatagggaccaaaaacatatttaaccctt 26683183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 1722146 - 1722222
Alignment:
Q  138 taaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaacc 214  Q
    ||||||| |||  ||||||||||  ||||| ||| |||||||||  ||||||||||  |||||||||||||||||||    
T  1722146 taaaagttgaaggaaaattttaaagagactaaaacaaaaagttgatatatttataaggaccaaaaacatatttaacc 1722222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 45070679 - 45070730
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttat 225  Q
    ||||||||  |||||||||   ||||||||||||||||||||||||||||||    
T  45070679 aaaagttggtatatttatagggaccaaaaacatatttaacccttgattttat 45070730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 4831577 - 4831630
Alignment:
Q  167 ttaaagaaaaagttgtaatatttataataaccaaaaacatatttaacccttgat 220  Q
    ||||| |||||||||  ||||||||||  ||||||||||||||||||| |||||    
T  4831577 ttaaataaaaagttgatatatttataaggaccaaaaacatatttaacctttgat 4831630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 47186471 - 47186405
Alignment:
Q  151 aaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    ||||||||||  ||||| |||  ||||||||  |||||||||| ||| |||||||||||||||||||    
T  47186471 aaaattttaaagagactaaaacgaaaagttggtatatttataagaacgaaaaacatatttaaccctt 47186405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 3135810 - 3135765
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttga 219  Q
    ||||||||  ||||||||||  ||||||||||||||||||||||||    
T  3135810 aaaagttggtatatttataaggaccaaaaacatatttaacccttga 3135765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 42236101 - 42236068
Alignment:
Q  184 atatttataataaccaaaaacatatttaaccctt 217  Q
    |||||||||| |||||||||||||||||||||||    
T  42236101 atatttataagaaccaaaaacatatttaaccctt 42236068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 160590 - 160538
Alignment:
Q  164 gacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccct 216  Q
    |||| ||| |||||||||  ||||||||||  |||||||||||||||||||||    
T  160590 gactaaaacaaaaagttggtatatttataaggaccaaaaacatatttaaccct 160538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 19114072 - 19114124
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttatt 226  Q
    ||||||||  ||||||||||  |||||||||||||||||| ||| ||||||||    
T  19114072 aaaagttgatatatttataaggaccaaaaacatatttaactcttaattttatt 19114124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 28540 - 28593
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttatta 227  Q
    ||||||||  |||||||||   |||||||||||||||||||||| |||||||||    
T  28540 aaaagttgacatatttatagggaccaaaaacatatttaaccctttattttatta 28593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 1870596 - 1870511
Alignment:
Q  132 aaagagtaaaagtcgaaacaaaattttaataagacttaaagaaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    ||||||||||||| |||| |||||||||| | || | ||| |||||||||  |||||||||  ||  ||||| |||||||||||||    
T  1870596 aaagagtaaaagttgaaagaaaattttaaaaggattaaaacaaaaagttgacatatttataggaataaaaaatatatttaaccctt 1870511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 44405992 - 44406044
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttatt 226  Q
    ||||||||  ||||||||||  || ||||||||||||||||||| ||||||||    
T  44405992 aaaagttggtatatttataaggactaaaaacatatttaaccctttattttatt 44406044  T

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Target: scaffold0384 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 7300 - 7344
Alignment:
Q  173 aaaaagttgtaatatttataataaccaaaaacatatttaaccctt 217  Q
    |||||||||  |||||||||  |||||||||||||||||||||||    
T  7300 aaaaagttggtatatttataggaaccaaaaacatatttaaccctt 7344  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 10555631 - 10555591
Alignment:
Q  184 atatttataataaccaaaaacatatttaacccttgatttta 224  Q
    ||||||||||  |||||||||||||||||||||| ||||||    
T  10555631 atatttataaggaccaaaaacatatttaaccctttatttta 10555591  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 36017037 - 36016981
Alignment:
Q  174 aaaagttgtaatatttataataaccaaaaacatatttaacccttgattttattatat 230  Q
    ||||||||  ||||||||||  || ||||||||||||||||||| |||| |||||||    
T  36017037 aaaagttgacatatttataaggactaaaaacatatttaaccctttatttaattatat 36016981  T

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