View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5840_low_17 (Length: 303)
Name: NF5840_low_17
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 21624221 - 21624334
Alignment:
| Q |
16 |
atcgcatgcatgtttaaattgtatttcatctaacgtaagactctttgacgttattctttaaaacattggatcctaatgtccaccctccattcttcttgga |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21624221 |
atcgcacgcatgtttaaattgtatttcatctaa-gtaagactctt-gacgttattctttaaaacattggatcctaatgtccaccctccattcttcttgga |
21624318 |
T |
|
| Q |
116 |
aatttaacatttcatg |
131 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21624319 |
aatttaacatttcatg |
21624334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 21624402 - 21624488
Alignment:
| Q |
201 |
ggtgttccttgatgagcttcttgataccccatcaattccttcattcacaattgaactattttaatctcatcaacgatgttgtgaaaca |
288 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21624402 |
ggtgttccttgatgagcttcttgatagcccatcaattccttcattcacaattgaacta-attaatctcatcaacgatgttgtgaaaca |
21624488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University