View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_low_18 (Length: 288)

Name: NF5840_low_18
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_low_18
NF5840_low_18
[»] chr5 (1 HSPs)
chr5 (4-288)||(21911824-21912115)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 21912115 - 21911824
Alignment:
Q  4 agcaaaggggtttacatatagggaaggagggagtacatagtatcaacaaaatcacattgcaaatgcaaacatgcattaaaatccattatagatttttgag 103  Q
    |||||||||| ||| ||||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21912115 agcaaaggggcttatatatagggacggagggagtacataacatcaacaaaatcacgttgcaaatgcaaacatgcattaaaatccattatagatttttgag 21912016  T
Q  104 atgtaaaaaccataatagatgacatatagagtcaattcaaatgtacactaattagatgctctatttactataatatttttcctgttatggataacagtgt 203  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21912015 atgtaaaagccataatagatgacatttagagtcaattcaaatgtacactaattagatgctctatttactataatatttttcctgttatggataacagtgt 21911916  T
Q  204 tgtgtt-------tgataattcaggtttaggaccaattggcttttgaaaaggaaggctttaaagtttaattctgccttagaatccgtcttct 288  Q
    ||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21911915 tgtgtttgatgtttgataattcaggtttaggaccaattggcttttaaaaaggaaggctttaaagtttaattctgccttagaatccgtcttct 21911824  T

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