View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_low_2 (Length: 884)
Name: NF5840_low_2
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 384 - 868
Target Start/End: Original strand, 31509925 - 31510409
Alignment:
| Q |
384 |
accaattatactcaacatcttttgttttcaaaagcatagaatactataacctcttgttgaagggaggcatataaaattgaggttgtttaaggaaagcaag |
483 |
Q |
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| T |
31509925 |
accaattatactcaacatcttttgttttcaaaagcatagaatactataacctcttgttgaagggaggcatataaaattgaggttgtttaaggaaagcaag |
31510024 |
T |
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| Q |
484 |
ggcgttgaacattctgtgattgaataggacaaaattatgtgatgaattgatttcaattaaagcaagagataatttattttttaatcaatgatggttaact |
583 |
Q |
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| T |
31510025 |
ggcgttgaacattctgtgattgaataggacaaaattatgtgatgaattgatttcaattaaagcaagagataatttattttttaatcaatgaaggttaact |
31510124 |
T |
|
| Q |
584 |
cggttagtaagatgttaactcagctgtaagttcgttgattcaattttctctcatgtcaatgtgaggattcatttgatgagtgctttataaatacatctgt |
683 |
Q |
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| T |
31510125 |
cggttaataagatgttaactcagctgtaagttcgttgattcaactttctttcatgtcaatgtgaggatttatttggtgagtgttttgtaaatacctctgt |
31510224 |
T |
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| Q |
684 |
taatatttgttgggtcttgatgaccgttttgtgattgattgaatgagataaaattataagacgaattgattttaaattaaggtatagataactaannnnn |
783 |
Q |
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| T |
31510225 |
taatatttgttgggttttgatgactgttttgtgattgattcaatgagataaaattataagacgaattgattttaaattaaggtatagataactaattttt |
31510324 |
T |
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| Q |
784 |
nncgtcaatgaatgttgatccagttgataaaaagttgagtcaattgcaaagtcgttgatttaactttctatcactcttgatgtga |
868 |
Q |
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| T |
31510325 |
taagtcaatgaatgttgatccagttgataaagagttgagtcaattgcaaagtcgttgattttactttctatcactcttgatgtga |
31510409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 31509574 - 31509884
Alignment:
| Q |
1 |
ttttggagttagtagtttgatgattatggagaatgaggctgagaagattcaatctgcacatcgaagattagaagctttggtggtggctattgaaggaatt |
100 |
Q |
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| T |
31509574 |
ttttggagttagtagtttgatgattatggaaaatgaggctgagaagattcaatctgcacatggaagattagaagctttggtggtggctattgaaggaatt |
31509673 |
T |
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| Q |
101 |
gaaaatggattagaatgtttgtttaagagattgattaatactcgtgtgtcttttttaaatattatttctcc----ttaatatggattatgaattcatatt |
196 |
Q |
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| T |
31509674 |
gaaaatggattagaatgtttgtttaagagattgattaatactcgtgtgtcttttttaaatattatttctccttaattaatatggattatgaaatcatatt |
31509773 |
T |
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| Q |
197 |
atagggatgatattttccaaatgtacagattgtcagattacacatgattttgtacttattgttattgatgcatttgtacaatttgtttgttacttaagtt |
296 |
Q |
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| T |
31509774 |
atagggatgacattttccaaatgtacagattgtcagattacacatgattttgtacttattgttattgatgcatttgtacaatttgtttgttacttaagtt |
31509873 |
T |
|
| Q |
297 |
tcttaaattga |
307 |
Q |
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| T |
31509874 |
tcttaaattga |
31509884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 360
Target Start/End: Original strand, 31509871 - 31509901
Alignment:
| Q |
330 |
gtttcttaaattgaagttttgtacctcccta |
360 |
Q |
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| T |
31509871 |
gtttcttaaattgaagttttgtacctcccta |
31509901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 9277836 - 9277754
Alignment:
| Q |
89 |
attgaaggaattgaaaatggattagaatgtttgtttaagagattgattaatactcgtgtgtcttttttaaatattatttctcc |
171 |
Q |
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| T |
9277836 |
attgaagggtttgaaaatggattggattgtttgtttaagcaccttattaatactcgtgtgtcttttcttaatattctttctcc |
9277754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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