View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_low_5 (Length: 543)
Name: NF5840_low_5
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_5 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 83363 - 83801
Alignment:
| Q |
1 |
ttattttgtgatgatttttgtgtgtgtataacgtcacatattcttaagtcatgaaaacatatgcataagttgttttgtgatatagagagttatgtgaaca |
100 |
Q |
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| T |
83363 |
ttattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatgtgtggttttgtgatatacaggcttatgtgaaca |
83462 |
T |
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| Q |
101 |
agtttgaaatatttttctgcacactacagtcatctatgtggtctattttacactttcatagtgatgtttctaattttaatatttggttcttgtgcatata |
200 |
Q |
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| T |
83463 |
aggttgaaatatttttctgcatactacagtcatttatgtggtctcttttacactttcatagtgatttttctaattttaaaatttggttcttgtgcatata |
83562 |
T |
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| Q |
201 |
tgtaattgccatgagtgaacttaccttgtgatgcttatatatgtatgtttttgtgatttgagaaaattataaaagctgtacataatttatataaggaaat |
300 |
Q |
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| T |
83563 |
tgtaattgccatgagtgaacttaccttgtgatgcttatatatgtatgtttttgtgatttgagaaaattataaaagcaatacataatttatatgaggaaat |
83662 |
T |
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| Q |
301 |
gtaatattgagaaacttttcaataagtttgaatagtttaaagttaaactgttcagcattccatacaattatatgatgatacttgattgaagaaaattgat |
400 |
Q |
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| T |
83663 |
gtaatattgagaaacttttcaataagtttgaatagtttaaagttaaactgttcaggattccatacaattatatgatgatacttgattgaagaaaattgac |
83762 |
T |
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| Q |
401 |
aggaataatttgttggccaaagttgaacccatgactaat |
439 |
Q |
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| T |
83763 |
aggcataatttgttcgccaaagttgaacccatgactaat |
83801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 452 - 536
Target Start/End: Original strand, 83858 - 83942
Alignment:
| Q |
452 |
ttatcataaattatttaaagtttgtttgatagtgtggtcatgagaatgaatttattataagtatcttagttctttgcctttgcta |
536 |
Q |
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| T |
83858 |
ttatcataaattatttaaagtttgtttgatagtgtggtcatgagaatgaatttattataagtattttagttctttacctttgcta |
83942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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