View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_low_6 (Length: 465)
Name: NF5840_low_6
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_6 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 9260 - 9692
Alignment:
| Q |
18 |
caaaactgtctgaaaaactaaggtacaaatttgtattagtgctggttaatggatttgatgaaggaaataaaaattattgattgcctttgattattannnn |
117 |
Q |
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| T |
9260 |
caaaactgtctgaaaaactaaggtacaaatttgtattagtgctggttaatggatttgctgaaggaaataaaaattattgattgcctttgattattattat |
9359 |
T |
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| Q |
118 |
nnnnn-aagnnnnnnnnnnnnnctatatttggcctcactgtgcaatgaagtgttgtcgacagctaatgatagagacttaagagatgaaagtccatccaaa |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9360 |
ttttttaagaaaaaataaaaaactatatttggcctcactgtgcaatgaagtgttgtcgacagctaatgatagagacttaagagatgaaagtccatccaaa |
9459 |
T |
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| Q |
217 |
caaatagcattatccatcataaaactatcatgagagtataagacttccagatttttcaaccctgcaataataatatgtaaataaaaatgatagttactat |
316 |
Q |
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| T |
9460 |
caaatagcattatccatcataaaactatcatgagagtgtaagacttccagatttttcaaccctgcaataataatatgtaaataaaaatgatagttactat |
9559 |
T |
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| Q |
317 |
gacaaaatagattcactttttactttagtaactgagaaataaccttgaccagttcttgtacaattggatatttgagtaagatacaggctgagagttttca |
416 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9560 |
aacaaaatagattcactttttactttagtaattgcgaaataaccttgaccagttcttgtacaattggatatttgagtaagatacaggctgagaaatttca |
9659 |
T |
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| Q |
417 |
aatctttgaagattatcaaatccgagtagttaa |
449 |
Q |
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| T |
9660 |
actctttgaaggatatcaaatccgagtagttaa |
9692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 389
Target Start/End: Original strand, 24249074 - 24249203
Alignment:
| Q |
260 |
cttccagatttttcaaccctgca--ataata-atatgtaaataaaaatgatagttactatgacaaaat-agattcactttttactttagtaactgagaaa |
355 |
Q |
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| T |
24249074 |
cttcaagatttttcaaccctgcataataatatatatgtaaatgaaaattatggttactatgtcaaaattagattaactttt-acttt-gta--tgagaaa |
24249169 |
T |
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| Q |
356 |
taaccttgaccagttcttgtacaattggatattt |
389 |
Q |
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| T |
24249170 |
taaccttgatgagttcttgtacaattggatattt |
24249203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 24248981 - 24249024
Alignment:
| Q |
176 |
cagctaatgatagagacttaagagatgaaagtccatccaaacaa |
219 |
Q |
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| T |
24248981 |
cagctaatgatagagacttaagagaagaaagtccgtccaaacaa |
24249024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 24266814 - 24266857
Alignment:
| Q |
176 |
cagctaatgatagagacttaagagatgaaagtccatccaaacaa |
219 |
Q |
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| T |
24266814 |
cagctaacgatagagatttaagagaagaaagtccatccaaacaa |
24266857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 24266997 - 24267032
Alignment:
| Q |
353 |
aaataaccttgaccagttcttgtacaattggatatt |
388 |
Q |
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| T |
24266997 |
aaataaccttgatcagttcttgtacaattggatatt |
24267032 |
T |
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