View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_low_7 (Length: 455)
Name: NF5840_low_7
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 11975830 - 11975401
Alignment:
| Q |
9 |
agcataggagaagacgggggaggagacggagttggaaccggctatagttgggagnnnnnnngaaattatagatcaacttatcccgctccacacaggagct |
108 |
Q |
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| T |
11975830 |
agcatgggagaagacgggggaggagacggagttggaaccggctatagttgggagaaaaaaagaaattatagatcaacttatcccgctccacacaggagct |
11975731 |
T |
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| Q |
109 |
gaatccgttgggaaagtttctgtggtttccattgttgggttcgcaggaatagggaagacaaaacttgcccgtcttatttgtgaggatgagcaagtcaaag |
208 |
Q |
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| T |
11975730 |
gaatccgttgggaaagtttctgtggtttccattgttgggttcgcaggaatagggaagacaaaacttgcccgtcttatttgtgaggatgagcaagtcaaag |
11975631 |
T |
|
| Q |
209 |
ctcacttcggccttcaaatttggatttatgatgtggaattcctcaataccactgacatgtcatctacttacactgacggcggaaaaggaaaccttgttgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11975630 |
ctcacttcggccttcaaatttggatttatgatgtggaattcctcaataccactgacatgtcatctacttacactgacggcggaaaaggaaaccttgttgt |
11975531 |
T |
|
| Q |
309 |
gctggataatttgaaaactgagatacttggggacgagatgctctctgatttggacaagatattaatgacgtccaatggtgcaagtgcaatactcataacc |
408 |
Q |
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| T |
11975530 |
gctggataatttgaaaactgagatacttggggacgagatgctctctgatttggacaagatattaatgacgtccaatggtgcaagtgcaattctcataacc |
11975431 |
T |
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| Q |
409 |
acacgtagtaaacttgtggccaacaatatt |
438 |
Q |
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| T |
11975430 |
acacgtagtaaacttgtggccaacaatatt |
11975401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 11730841 - 11730896
Alignment:
| Q |
154 |
ggaatagggaagacaaaacttgcccgtcttatttgtgaggatgagcaagtcaaagc |
209 |
Q |
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| T |
11730841 |
ggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagc |
11730896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 11730395 - 11730452
Alignment:
| Q |
152 |
caggaatagggaagacaaaacttgcccgtcttatttgtgaggatgagcaagtcaaagc |
209 |
Q |
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| T |
11730395 |
caggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagc |
11730452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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