View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_low_8 (Length: 417)
Name: NF5840_low_8
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 60 - 399
Target Start/End: Complemental strand, 30553744 - 30553401
Alignment:
| Q |
60 |
aaatcgaccaaccaaaccgatccaaacctaataattagacgaaactaacttatcagttctgataatcc----gagcgatttttattaacccaaaaaccag |
155 |
Q |
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| T |
30553744 |
aaatcgaccaaccaaaccgatccaaaactaataattagacgaaactaacttatcagttctgataatcctaatgagcgatttttatcaacccaaaaatcag |
30553645 |
T |
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| Q |
156 |
tttctataacacttacagtatttacttggttttcatcctaaaaaatgatttctattaactaaaaaattgattttctagaatccaatagctcaattacttc |
255 |
Q |
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| T |
30553644 |
tttctataacacttagagtacttacttggtttcaatcctaaaaattgatttctattaactaaaaaattgattttctagaatccaataactcaattacttc |
30553545 |
T |
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| Q |
256 |
taaaccttgattaaacttgattcaacacttaattgatctatgatttacattttgacctttactctaagtcccgatcatcactgacttcgatttctaagcc |
355 |
Q |
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| T |
30553544 |
taaaccttgattaaacttgattcaacacttaattgatctatgatttacattttgacctttactctaagtcccgatcatcactgacttcgatttctaagcc |
30553445 |
T |
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| Q |
356 |
ttctttcttgtaaattgatttttgctaagttaaaattcaatttt |
399 |
Q |
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| T |
30553444 |
ttctttctcgtaaattgatttttgctaagttaaaattcaatttt |
30553401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30554692 - 30554626
Alignment:
| Q |
1 |
aaccgaaaatccaaatcgacctaa-ccgaaaaagtatacaaccttatttagttcggttcaaaatcga |
66 |
Q |
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| T |
30554692 |
aaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcga |
30554626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 779628 - 779589
Alignment:
| Q |
23 |
aaccgaaaaagtatacaaccttatttagttcggttcaaaa |
62 |
Q |
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| T |
779628 |
aaccgaaaaagtatccaaccttgtttagttcggttcaaaa |
779589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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