View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841-Insertion-1 (Length: 1022)
Name: NF5841-Insertion-1
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 188 - 757
Target Start/End: Complemental strand, 46945471 - 46944908
Alignment:
| Q |
188 |
gttcttcaacaaatcatccatttttattccttttcttccttagcattcaaacaaatcctttgaatgaatttgtttgaatgttaaaaaagaaaatttaatc |
287 |
Q |
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| T |
46945471 |
gttcttcaacaaatcattcatttttattccttttcttctttagcattcaaacaaatcctttgaatgaatttgtttgaatgttataaaagaaaatttaatc |
46945372 |
T |
|
| Q |
288 |
tctacctaattccctaatttttgtcattgaatgacttaattcctacataggtccccannnnnnnatggaataacttttttgaatgctaaagatgaaagaa |
387 |
Q |
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| T |
46945371 |
tctacctaattccctaatttttgtcattgaatgacttaatccctacataggtccccatttttttatggaataatttttttgaacgctaaagatgaaagaa |
46945272 |
T |
|
| Q |
388 |
acaaaatatacaatttattgaagaataaattatttgcaaacattattttttgttgtagcaacaaaaatgtctctttttattgtcaagaataaaattatct |
487 |
Q |
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| T |
46945271 |
acaaaatatacaatttattgaagaataaattatttgcaaacatt---ttttgttgtagcaacaaaaatgtctctttttattgtcaagaataaaattatct |
46945175 |
T |
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| Q |
488 |
cttttcaattattgttatggatccaattgtcctttttatcagggacttaaggttgttttttatgttatcatcagttaaattgggtatcacagattttctc |
587 |
Q |
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| T |
46945174 |
cttttcaattattgttatggatccaattgtcctttttatcagggacttaaggttgttttttatgttatcttcagttaaattgggtatcatagattttctc |
46945075 |
T |
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| Q |
588 |
atggaccgaagtaattattcactctaatataattacatacccatgcaaacaacgttaattcattcaagaaggcgtatataaagtgatctccatattttga |
687 |
Q |
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| T |
46945074 |
atggaccgaagtaattattcactctaatataattacatacccatgcaaacaacgttaattcattcaagaaggcgtatataaagtgatctccatattttga |
46944975 |
T |
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| Q |
688 |
cactaatggaagaaacatcatatatacttttctactattctcaacaaaagaaacttt-attttttactatt |
757 |
Q |
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| T |
46944974 |
cacaaatggaagaaacatc----atacttttttactattctcaacaaaagaaactttaattttttactatt |
46944908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 46945630 - 46945495
Alignment:
| Q |
29 |
tcaagacaacttagtctttaattgaaccactatcaaaaaatggacaattaggccccctaacaataattaaaagtgagatagtttgatctctttacagtaa |
128 |
Q |
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| T |
46945630 |
tcaagacaacttagtctt-aattgaaccactatcaaaaaatggacaattaggtcccctaacaataattaaaagtgagatagtttgatctctttacagtaa |
46945532 |
T |
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| Q |
129 |
ttaaaaagagacaatttgatccttataacaacacacc |
165 |
Q |
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| T |
46945531 |
ttaaaaagagacattttgatccttataacaacacacc |
46945495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 746 - 949
Target Start/End: Complemental strand, 46944951 - 46944737
Alignment:
| Q |
746 |
ttttttactattctcaataaaagaatcttta--ttattattattggtgaatatgtaattgtgaggattctttc-aaggtttgcctnnnnnnnctaattgt |
842 |
Q |
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||||||||||||||||| ||||||| ||||| || ||| ||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||| |
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| T |
46944951 |
ttttttactattctcaacaaaagaaactttaattttttactattggtaaatatataattgtgaggattctttcaaaggtttgcctaaaaaaactaattgt |
46944852 |
T |
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| Q |
843 |
atat-aaatacactagtc-aatacttggaaatcagtg-tatgatcttttctat-aacttgagatgcaag-tttgtgacattttcctaa--ttggtgtca- |
934 |
Q |
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|||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||| |
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| T |
46944851 |
atataaaatacactagtcaaatacttggaaatcagtgttatgatcttttctataaacttgagatgcaagttttgtgacattttcctaaatttggtatcat |
46944752 |
T |
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| Q |
935 |
tatgtcatatatagt |
949 |
Q |
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||||||||||||||| |
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| T |
46944751 |
tatgtcatatatagt |
46944737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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