View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5841-Insertion-10 (Length: 268)

Name: NF5841-Insertion-10
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5841-Insertion-10
NF5841-Insertion-10
[»] chr8 (5 HSPs)
chr8 (9-268)||(12200561-12200820)
chr8 (9-268)||(12444989-12445248)
chr8 (9-268)||(12195543-12195802)
chr8 (9-268)||(12439971-12440230)
chr8 (17-268)||(4962099-4962357)
[»] chr4 (15 HSPs)
chr4 (9-208)||(37826633-37826838)
chr4 (89-204)||(45365867-45365982)
chr4 (86-208)||(7790376-7790498)
chr4 (8-195)||(7773481-7773671)
chr4 (94-208)||(7237386-7237500)
chr4 (86-208)||(7771691-7771813)
chr4 (9-59)||(7908553-7908603)
chr4 (89-134)||(7878045-7878090)
chr4 (151-208)||(48853042-48853099)
chr4 (151-219)||(48864396-48864464)
chr4 (9-109)||(48898959-48899059)
chr4 (151-206)||(48147358-48147413)
chr4 (151-208)||(49038521-49038578)
chr4 (151-208)||(49043811-49043868)
chr4 (89-126)||(50669384-50669421)
[»] chr5 (2 HSPs)
chr5 (94-208)||(9120067-9120181)
chr5 (96-194)||(179364-179462)
[»] chr3 (3 HSPs)
chr3 (13-125)||(11024223-11024335)
chr3 (89-219)||(47451532-47451662)
chr3 (151-208)||(11024146-11024203)
[»] chr1 (2 HSPs)
chr1 (10-125)||(24340634-24340749)
chr1 (10-125)||(24352999-24353114)
[»] chr6 (1 HSPs)
chr6 (9-62)||(21979420-21979473)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 12200561 - 12200820
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  12200561 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggtatttggag 12200660  T
Q  109 aatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200661 aatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12200760  T
Q  209 aattcctattggcaatgacatacattgcttttcccctatatactctacaaaaagtggtga 268  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12200761 aattcctattggcaatgacatgcattgcttttcccctatatactctacaaaaagtggtga 12200820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 12444989 - 12445248
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  12444989 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggtatttggag 12445088  T
Q  109 aatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12445089 aatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12445188  T
Q  209 aattcctattggcaatgacatacattgcttttcccctatatactctacaaaaagtggtga 268  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12445189 aattcctattggcaatgacatgcattgcttttcccctatatactctacaaaaagtggtga 12445248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 12195543 - 12195802
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggag 108  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||   | |||||||||||||||||||||||     
T  12195543 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaa 12195642  T
Q  109 aatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    ||||||| |||||||||||||||||||||||||||| |||  |||||||||||| |||||||  ||||||||  |  || |||||||| |||||||||||    
T  12195643 aatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T
Q  209 aattcctattggcaatgacatacattgcttttcccctatatactctacaaaaagtggtga 268  Q
    ||||||||||| ||||||||||| ||| ||||||||  ||||||||||||||||||||||    
T  12195743 aattcctattgacaatgacataccttggttttcccccgtatactctacaaaaagtggtga 12195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 12439971 - 12440230
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggag 108  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||   | |||||||||||||||||||||||     
T  12439971 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaa 12440070  T
Q  109 aatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    ||||||| |||||||||||||||||||||||||||| |||  |||||||||||| |||||||  ||||||||  |  || |||||||| |||||||||||    
T  12440071 aatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T
Q  209 aattcctattggcaatgacatacattgcttttcccctatatactctacaaaaagtggtga 268  Q
    ||||||||||| ||||||||||| ||| ||||||||  ||||||||||||||||||||||    
T  12440171 aattcctattgacaatgacataccttggttttcccccgtatactctacaaaaagtggtga 12440230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 4962357 - 4962099
Alignment:
Q  17 ctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctat--gta--ttatggtttgtgggtatttggagaatt 112  Q
    ||||||||||||||||||||||||| ||||||| ||||||||  || ||||  || |||  ||| |  |||  |||||||||||||||||||||||||||    
T  4962357 ctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaagttatggtttgtgggtatttggagaatt 4962258  T
Q  113 tctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgt---tcgtcttggaccaagactcttgta 209  Q
    ||| |||||||||   ||| ||| |   |||   |   |||||||||||| |||||||  ||||||||||| |   ||||| ||||| ||||||||| ||    
T  4962257 tctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaagactcttcta 4962158  T
Q  210 attcctattggcaatgacatacattgcttttcccctatatactctacaaaaagtggtga 268  Q
    ||||||||||    | ||||   || ||||||||| ||||| |||||||||||||||||    
T  4962157 attcctattgatcgtaacatttgtttcttttccccaatatattctacaaaaagtggtga 4962099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 37826838 - 37826633
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacc---tc---ttccagattatttcaaccatggtcctatgtattatggtttgtgggtat 102  Q
    |||||||||||| ||||||||||||||||| || ||||||||||   ||   |||||||| ||||  || ||| ||||   |||| ||||||||||||||    
T  37826838 attgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagttccagatgattttcacgatgatcctccatattttggtttgtgggtat 37826739  T
Q  103 ttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagac 202  Q
    ||||||||||||| |||||||||   |||     | ||||||| || ||| || || ||| |||||||  ||||||||||| |||||||||||| |||||    
T  37826738 ttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcgtcttggactaagac 37826639  T
Q  203 tcttgt 208  Q
    ||||||    
T  37826638 tcttgt 37826633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 45365982 - 45365867
Alignment:
Q  89 tggtttgtgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 188  Q
    ||||||||||||||||||||||||| | ||| | |||  |||| ||| ||||||| | ||  |||||||||||| |||||||  ||| ||| ||||||||    
T  45365982 tggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcg 45365883  T
Q  189 tcttggaccaagactc 204  Q
    |||||||| |||||||    
T  45365882 tcttggacaaagactc 45365867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 7790376 - 7790498
Alignment:
Q  86 ttatggtttgtgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgt 185  Q
    |||| ||||||||||||||||||||||||| ||| ||||   || | ||| ||||||| | ||  |||||||||||| |||||||  ||||||| ||| |    
T  7790376 ttatagtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcat 7790475  T
Q  186 tcgtcttggaccaagactcttgt 208  Q
    ||||||||||| || ||||||||    
T  7790476 tcgtcttggactaaaactcttgt 7790498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 7773671 - 7773481
Alignment:
Q  8 aattgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatg---tattatggtttgtgggtattt 104  Q
    ||||||| |||||||||||||||||||||||||| | ||||| ||||||||| || || |  ||||| || |  ||    ||| ||||||||||||||||    
T  7773671 aattgtttcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaataatgttcaccatagtgcattggtacattctggtttgtgggtattt 7773572  T
Q  105 ggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttgga 195  Q
    ||||||| ||| ||| |||||  || | ||  || |||| | ||  |||||||||||| |||||||  ||||||| ||| |||||||||||    
T  7773571 ggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 7237500 - 7237386
Alignment:
Q  94 tgtgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttg 193  Q
    |||||||||||||||||||||| |||||||||  |  | ||| ||||||| | ||  ||| |||||||| |||||||  ||||||| ||| ||||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  194 gaccaagactcttgt 208  Q
    ||| || ||||||||    
T  7237400 gactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 7771691 - 7771813
Alignment:
Q  86 ttatggtttgtgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgt 185  Q
    |||| ||||||||||||||||||||||||| ||| ||||   || | ||| ||||||| | ||  ||| |||||||| |||||||  ||||||| ||| |    
T  7771691 ttatagtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcat 7771790  T
Q  186 tcgtcttggaccaagactcttgt 208  Q
    ||||| ||||| || ||||||||    
T  7771791 tcgtcatggactaaaactcttgt 7771813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 7908553 - 7908603
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttcca 59  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||| |||||    
T  7908553 attgttgcctttgatttaatggaaaggaagttgtttgagatacctattcca 7908603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 7878045 - 7878090
Alignment:
Q  89 tggtttgtgggtatttggagaatttctgagtctatggaatatgaat 134  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtctatgggctatgaat 7878090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 48853042 - 48853099
Alignment:
Q  151 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    ||||||||||||  ||||||  ||||||| |||||||||||||||| |||||||||||    
T  48853042 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 48853099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 48864396 - 48864464
Alignment:
Q  151 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgtaattcctattg 219  Q
    |||||||||||| |||||||  ||||||| ||| |||||||||||| |||| ||||||  |||||||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattg 48864464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 48898959 - 48899059
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggag 108  Q
    ||||||||||||||||||| |||||||||| || |||||||  ||| ||||||| ||||  | |||  ||||  | ||| |||||||||||| |||||||    
T  48898959 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggag 48899058  T
Q  109 a 109  Q
    |    
T  48899059 a 48899059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 48147413 - 48147358
Alignment:
Q  151 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactctt 206  Q
    |||||||||||| |||||||  ||||||| ||| |||||||||||| |||||||||    
T  48147413 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 49038578 - 49038521
Alignment:
Q  151 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    |||||||||||| |||||||  ||||||| | | |||||||||||| |||||||||||    
T  49038578 ttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgt 49038521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 49043868 - 49043811
Alignment:
Q  151 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    |||||||||||| |||||||  ||||||| ||| |||||| ||||| |||||||||||    
T  49043868 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgt 49043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 50669384 - 50669421
Alignment:
Q  89 tggtttgtgggtatttggagaatttctgagtctatgga 126  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  50669384 tggtttgtgggtatttggagaatttctcagtctttgga 50669421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 9120067 - 9120181
Alignment:
Q  94 tgtgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttg 193  Q
    |||||||||||||||||||||| ||| |||||  |||| |||||| |||| | ||  |||||||||||| |||||||  ||||||| ||| ||| |||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttg 9120166  T
Q  194 gaccaagactcttgt 208  Q
    ||  || ||||||||    
T  9120167 gaagaaaactcttgt 9120181  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 179364 - 179462
Alignment:
Q  96 tgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttgg 194  Q
    |||||||||||| ||||||| ||| |||||  |||| ||| ||||||| | ||  |||||||||||| |||||||  ||||||| ||| ||| ||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 11024335 - 11024223
Alignment:
Q  13 ttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggagaatt 112  Q
    |||||||||||||| |||||||| || |  | ||||| ||| ||||||||  |||  | ||||  |||||| ||| || ||||||| |||||||||||||    
T  11024335 ttgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatt 11024236  T
Q  113 tctgagtctatgg 125  Q
    ||| |||||||||    
T  11024235 tctcagtctatgg 11024223  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 47451662 - 47451532
Alignment:
Q  89 tggtttgtgggtatttggagaatttctgagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 188  Q
    ||||||||||||||||||||||||||| |||||| ||  | || ||| | ||||| | |   |||||||||||| |||||||  ||||||| |   ||||    
T  47451662 tggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcg 47451563  T
Q  189 tcttggaccaagactcttgtaattcctattg 219  Q
    ||||||   |||||||||||  |||||||||    
T  47451562 tcttgggaaaagactcttgttcttcctattg 47451532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  151 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 208  Q
    ||||||||||||  ||||||  ||||||| ||| |||||||||||| |||||||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 24340634 - 24340749
Alignment:
Q  10 ttgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggaga 109  Q
    ||||||||||||| ||| | ||||||||| | |||||||| ||||| |||||| ||||  ||||||||  || |  || |||||| ||||||| | |||     
T  24340634 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24340733  T
Q  110 atttctgagtctatgg 125  Q
    |||||| |||||||||    
T  24340734 atttctaagtctatgg 24340749  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 24352999 - 24353114
Alignment:
Q  10 ttgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagattatttcaaccatggtcctatgtattatggtttgtgggtatttggaga 109  Q
    ||||||||||||| ||| | ||||||||| | |||||||| ||||| |||||| ||||  ||||||||  || |  || |||||| ||||||| | |||     
T  24352999 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24353098  T
Q  110 atttctgagtctatgg 125  Q
    |||||| |||||||||    
T  24353099 atttctaagtctatgg 24353114  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 21979473 - 21979420
Alignment:
Q  9 attgttgcctttgatttaatggaaaggaaattggtagagatacctcttccagat 62  Q
    |||||||||||||||||||| ||||||||| |  | ||||| ||||||||||||    
T  21979473 attgttgcctttgatttaatagaaaggaaactttttgagatccctcttccagat 21979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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