View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5841-Insertion-3 (Length: 940)

Name: NF5841-Insertion-3
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5841-Insertion-3
NF5841-Insertion-3
[»] chr1 (2 HSPs)
chr1 (274-930)||(28067165-28067799)
chr1 (9-142)||(28067932-28068065)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 274 - 930
Target Start/End: Complemental strand, 28067799 - 28067165
Alignment:
Q  274 gttgaattggtatgactttgttttgtaaattataaattgggttgatttgggtttcaattatggttcatcttgttggtagatagattcatagatatggata 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28067799 gttgaattggtatgactttgttttgtaaattataaattgggttgatttgggtttcaattatggttcatcttgttggtagatagattcatagatatggata 28067700  T
Q  374 tggattagtttgtgcatgttgtccttttcataacatagatattatcaggactgaagttagttgatgataattaaggattattgttgtcaatcgcccatcg 473  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28067699 tggattagtttgtgcatgttgtctttttcataacatagatattatcaggactgaagttagttgatgataattaaggattattgttgtcaatcgcccatcg 28067600  T
Q  474 cggaaaattgtattttgttcaaattcagctgcaccatagtggtatagcttcaattcgacaatattttgtaccaatcaacatatctcaaaacaacagtgat 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||||||||||    
T  28067599 cggaaaattgtattttgttcaaattcagctgcaccatagtggtatagctgcaattcgacaatattttataccaaataacatatcgcaaaacaacagtgat 28067500  T
Q  574 ttcatcaaattcccctatgctatagtgctttagagtcgctattgatccaggtaataactgggctggagatgttgattgtgatttttcttttggtcatcga 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28067499 ttcatcaaattcccctatgctatagtgctttagagtcgctattgatccaggtaataactgggctggagatgttgattgtgatttttcttttggtcattga 28067400  T
Q  674 tggaagttttggtaggaagacttgtttgaagttagaaattattgatagagtatacgccgcaaacagttctgatgtcaattttagtgaattatacaggatg 773  Q
    |||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28067399 tggaagttttggtaggaagacttgtttgaagttagaa--------------atacgccgcaaacagttctgatgtcaattttagtgaattatacaggacg 28067314  T
Q  774 aacaaatactgttatttgccgtctc-tttttgaga-ttgtattctttgatttgcatagatactttaatttctgtcctcactgata-tctctaatttgaca 870  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||              |||||||||||||||||||||| ||||||||||||||    
T  28067313 aacaaatactgttatttgccgtctcttttttgagatttctattctttga--------------ttaatttctgtcctcactgatactctctaatttgaca 28067228  T
Q  871 cacaatatttggtttgatgtatttcatg-tgtcatatg-tcatga-tttgtatatcattgtct 930  Q
    | |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  28067227 cgcaatatttggtttgatgtatttcatgttgtcatatgttcatgattttgtatatcattgtct 28067165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 28068065 - 28067932
Alignment:
Q  9 aaaacaatcgcaaaaactgtatataaacgcgtcagactgcnnnnnnnnccttcttattttctttctcatcacaaatattcaatgcttcatttcacgcttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28068065 aaaacaatcgcaaaaactgtatataaacgcgtcagactgcttttttttccttcttattttctttctcatcacaaatattcaatgcttcatttcacgcttc 28067966  T
Q  109 ccatgtttaagccctgatttcatcttctttaagg 142  Q
    ||||||||||||||||||||||||||||||||||    
T  28067965 ccatgtttaagccctgatttcatcttctttaagg 28067932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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