View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841-Insertion-4 (Length: 885)
Name: NF5841-Insertion-4
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 881
Target Start/End: Complemental strand, 18644489 - 18643610
Alignment:
| Q |
9 |
gttatcccaactggaatttataaccatgatacaaatagtgacttaagannnnnnnctgcagggtatcattgtttttgcatcagtgatggcaacattggga |
108 |
Q |
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| T |
18644489 |
gttatcccaaccggaatttaaaaccatgatacaaatattgacttaagacgtttta-tgcagggtatcattgtttttgcatcagtgatggcgaccttggga |
18644391 |
T |
|
| Q |
109 |
ttgcagattttgattgagtctggcaggcaaattattgcaaaggtaattgagattagtacttgtttcactatgaatgagtaatcaaagcttttgttttaga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
18644390 |
ttgcagattttgattgagtctggcaggcaaattattgcaaaggtaattgagattagtacttgtttcactgtgaatgagtaat-aaagcttttgttttaga |
18644292 |
T |
|
| Q |
209 |
tattttgtgagccttacttgtaatcttgatttttt-aatgtcttgtttcattctttctcttatagactaaacctgaaatggatcatagtgagttgggatg |
307 |
Q |
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| T |
18644291 |
tattttgtgagccttacttgtaatcttgatttttttaatgtcttgtttcattctttctcttatagactaaacctgaaatggatcatagtgagttgggatg |
18644192 |
T |
|
| Q |
308 |
gatgattgcgatcatggtatccgtaaccgttgtgaagttcgttttaatgatctattgtcgaaggtttacaaacgagattgtaaaagcgtatgcgcaggat |
407 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18644191 |
gatgattgcgatcatggtatctgtaaccgttgtgaagttcgttttaatggtatactgtcgaaggtttacaaacgagattgtaaaagcctatgcgcaggat |
18644092 |
T |
|
| Q |
408 |
cattgttttgatgttattaccaattcagtcggattagctgctgctgcgttagctgtcaagttctattggtggattgatccattgggagctattattgtga |
507 |
Q |
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| T |
18644091 |
cactgtttcgatgttattactaattcagttggattagctgctgctgtgttagctgtcaagttctattggtggattgatccattgggagctattattgtga |
18643992 |
T |
|
| Q |
508 |
gttcattactaccactaaatggattttatagttagtaatctcaaatttag--------tttcactagtcttacatattttccttgacttgcacctaattc |
599 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18643991 |
gttcgttactaccactaaatggattttatagttagtaatctctaatttagtttgcatatttcactagtcttacatattttccttgacttgcacctaattc |
18643892 |
T |
|
| Q |
600 |
ctcaagtaaactagtaattatttctgggacacggattccttgcaataacaagaaataatcaatcccatccattatttttagatcttatggctcagatcgc |
699 |
Q |
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| T |
18643891 |
ctcaagtaaactagtaattatttctggggcacggattccttgcaacaacaagcaataatcaatcccatccattatttttagatcttatggctcagatcgc |
18643792 |
T |
|
| Q |
700 |
acaatcactaaatcagttttaaacaatctcgatcattgatttagataagacagtcgagttttgcagggaatttgattttgtctgtagacgcgcccactct |
799 |
Q |
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| T |
18643791 |
acaatcactaaatcagttttaaacaatctcgatcattgatttagataagacaatcgagttttgcagggaa-ttcattttgtctgtagacgcgcccactct |
18643693 |
T |
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| Q |
800 |
cctactttgtccctcatgtattgtcatttatgtctcgttttttc-aatttgtcctataagtgcgtaacattctgtatcattat |
881 |
Q |
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| T |
18643692 |
cctactttgtccctcatgtattgtcatttatgtctcgttttttcaaatttgtcctataagtgcgtaacgttctgtatcattat |
18643610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 27309089 - 27308999
Alignment:
| Q |
65 |
tgcagggtatcattgtttttgcatcagtgatggcaacattgggattgcagattttgattgagtctggcaggcaaattattgcaaaggtaat |
155 |
Q |
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| T |
27309089 |
tgcagggtatcattgtttttgcatccgtgatggcaaccttgggcttgcagattttgatcgagtccggtcggcaaatttttgcaaaggtaat |
27308999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 306 - 510
Target Start/End: Complemental strand, 27308852 - 27308648
Alignment:
| Q |
306 |
tggatgattgcgatcatggtatccgtaaccgttgtgaagttcgttttaatgatctattgtcgaaggtttacaaacgagattgtaaaagcgtatgcgcagg |
405 |
Q |
| |
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|||||||| | ||| ||||||| || || || ||||||||| || | ||||||||||||||||| |||| ||| || ||||| | ||| ||||| || | |
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| T |
27308852 |
tggatgatcgggattatggtatttgttactgtcgtgaagttcattcttatgatctattgtcgaagatttaaaaatgaaattgtcagagcatatgcacaag |
27308753 |
T |
|
| Q |
406 |
atcattgttttgatgttattaccaattcagtcggattagctgctgctgcgttagctgtcaagttctattggtggattgatccattgggagctattattgt |
505 |
Q |
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|||||| ||| ||||| ||||| ||||| || |||||||| ||||||| ||||||||||||||| |||||||| |||||| ||||||||| |||| |
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| T |
27308752 |
atcattttttcgatgtcattactaattctgttggattagccgctgctgttctagctgtcaagttcttctggtggatggatccaacaggagctattcttgt |
27308653 |
T |
|
| Q |
506 |
gagtt |
510 |
Q |
| |
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|||| |
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|
| T |
27308652 |
aagtt |
27308648 |
T |
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