View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5841-Insertion-7 (Length: 452)

Name: NF5841-Insertion-7
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5841-Insertion-7
NF5841-Insertion-7
[»] chr2 (1 HSPs)
chr2 (8-452)||(39631232-39631681)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Original strand, 39631232 - 39631681
Alignment:
Q  8 ataaattaattaaactttctttggtttcataattgaaataaagtactggagacaacaagccaaagattccacttgatttttagtatatat----ctacaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||||    
T  39631232 ataaattaattaaactttctttggtttcataattgaaataaagtactggagacaacaagccaaagattccacttgatttttagtatatctacaactacaa 39631331  T
Q  104 gtatgtcacatgatttcagttggacaaattggactctatagtttatttgttcctatgactgccaccagatatgaatgaattatgataccacgcaagtctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  39631332 gtatgtcacatgatttcagttggacaaattggactctatagtttatttgttcctatgactgccaccagatatgaatgaattatgataccactcaaatctt 39631431  T
Q  204 tctgacttattcagaattaaaaagggagcaaaagatttccaaaaccttgacaatatatgcctttgaaacttgtttaactcataacttaaggtatgtacaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39631432 tctgacttattcagaattaaaaagggagcaaaagatttccaaaaccttgacaatatatgcctttgaaacttgtttaactcataacttaaggtatgtacaa 39631531  T
Q  304 ctaatcttaatactataattgattaaa-tactgatggctgatcatcatttgtttattgattaaacgtacgtggcatcttaatctccccgaaatgttaaag 402  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39631532 ctaatcttaatactataattgattaaattactgatggctgatcatcttttgtttattgattaaacgtacgtggcatcttaatctccccgaaatgttaaag 39631631  T
Q  403 ctcattcaaacaaattgttannnnnnnnaatatttctagtggcataatat 452  Q
    ||||||||||||||||||||        ||||||||||||||||||||||    
T  39631632 ctcattcaaacaaattgttattttttttaatatttctagtggcataatat 39631681  T

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