View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_high_2 (Length: 580)
Name: NF5841_high_2
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 25189962 - 25190342
Alignment:
| Q |
17 |
attcatagatacaagttataacatatttaaaatatcaaagatagatcatgaacatcataccttttagattttagagatagtcagtgatcgagagtaagta |
116 |
Q |
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| T |
25189962 |
attcatatataaaagttatagaatgcttacaatatcaaagatagatcatgaacatcataccttttagattttagagattaccagtgatcgagagtaagta |
25190061 |
T |
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| Q |
117 |
tgagagtatgactatcatcacggacgtttagggtttcaaaaacactattaattgtttaaatgagataatgattaaatagctaattacagttaaagaagag |
216 |
Q |
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| T |
25190062 |
tgagactatgactatcatcatggacgtttagggtttcaaacacactattaattgtttaaatgagataacgattaaatagttaattatagttaaagaagag |
25190161 |
T |
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| Q |
217 |
ggacctttcattgagtataattgaatgactaaatccatcatggtccattttaaaacaaagtcctatcaaataattagtgcttaataacaagtg--ttcaa |
314 |
Q |
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| T |
25190162 |
agacctttcattgaatataattgaatgactaaatccatcatggtccattttaaaacaaagtcctatcaaataattagtgcttaataacaagtgtattcaa |
25190261 |
T |
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| Q |
315 |
taatttaatctaacattatcattttcattcttccactaaaagttagatttcagaagaaagtaagtgtatttctctttcaag |
395 |
Q |
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| T |
25190262 |
taatttaatctaacattatcattttcattcttccactaaaagttagatttcagaagaaagtaagtgtatttctctttcaag |
25190342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 437 - 564
Target Start/End: Original strand, 25190360 - 25190487
Alignment:
| Q |
437 |
tgacaactgaagtttaattcgaatatgctccacaaactctaaggaacaaactgagaagtgctataccttactgcacctaaatgaatcttaaaagttaaga |
536 |
Q |
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| T |
25190360 |
tgacaactgaagtttcattcgaatatgctccacaaactctaaggaacaaactgagaagtgctataccttactgcacctaaatgattcttaaaagttaaga |
25190459 |
T |
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| Q |
537 |
ctaagatgaggaaaagccagtttcaaag |
564 |
Q |
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| T |
25190460 |
ctaagatgaggaagagccagtttcaaag |
25190487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 25188730 - 25188793
Alignment:
| Q |
17 |
attcatagatacaagttataacatatttaaaatatcaaagatagatcatgaacatcataccttt |
80 |
Q |
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| T |
25188730 |
attcatagatacaagttataacatatttaaaatatcaaagatagatcatgaacatcataccttt |
25188793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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