View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_high_3 (Length: 475)
Name: NF5841_high_3
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Complemental strand, 39631687 - 39631232
Alignment:
| Q |
11 |
cacagaatattatgccactagaaatattnnnnnnnntaacaatttgtttgaatgagctttaacatttcggggagattaagatgccacgtacgtttaatca |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631687 |
cacagaatattatgccactagaaatattaaaaaaaataacaatttgtttgaatgagctttaacatttcggggagattaagatgccacgtacgtttaatca |
39631588 |
T |
|
| Q |
111 |
ataaacaaaagatgatcagccatcagta-tttaatcaattatagtattaagattagttgtacataccttaagttatgagttaaacaagtttcaaaggcat |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631587 |
ataaacaaaagatgatcagccatcagtaatttaatcaattatagtattaagattagttgtacataccttaagttatgagttaaacaagtttcaaaggcat |
39631488 |
T |
|
| Q |
210 |
atattgtcaaggttttggaaatcttttgctccctttttaattctgaataagtcagaaagatttgcgtggtatcataattcattcatatctggtggcagtc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39631487 |
atattgtcaaggttttggaaatcttttgctccctttttaattctgaataagtcagaaagatttgagtggtatcataattcattcatatctggtggcagtc |
39631388 |
T |
|
| Q |
310 |
ataggaacaaataaactatagagtccaatttgtccaactgaaatcatgtgacatacttgtag----atatatactaaaaatcaagtggaatctttggctt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
39631387 |
ataggaacaaataaactatagagtccaatttgtccaactgaaatcatgtgacatacttgtagttgtagatatactaaaaatcaagtggaatctttggctt |
39631288 |
T |
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| Q |
406 |
gttgtctccagtactttatttcaattatgaaaccaaagaaagtttaattaatttat |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631287 |
gttgtctccagtactttatttcaattatgaaaccaaagaaagtttaattaatttat |
39631232 |
T |
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