View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_high_7 (Length: 354)
Name: NF5841_high_7
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 2059807 - 2059623
Alignment:
| Q |
10 |
attatactctacaattataatttcattaatcaagcatattttcttaggnnnnnnnnc--taatcaagcatatttaatttttataaacaaagttgtcttag |
107 |
Q |
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| T |
2059807 |
attatactctacaattataatttcattaatcaagcatattttcttaggaaaaaaaaaattaatcaagcatatttaatttttataaataaagttgtcttaa |
2059708 |
T |
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| Q |
108 |
ttaatgatttcagtttatgcgatcatagataaaattcaaatctaatacttagacatgtgtcttaagggcctagggcacatgttag |
192 |
Q |
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|||||| ||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
2059707 |
ttaatggttttagtttatgcgatcatagagagaattcaaatctaatacttagacatgtgtcttaaggacctagagcacatgttag |
2059623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 2059577 - 2059477
Alignment:
| Q |
242 |
ggatcatacccattcataatggagctcgactcagattctgcattcatctttcaagct-----tggtgttcgaaagattgtagaatacggaccaacgatta |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2059577 |
ggatcatacccattcataatggagctcgactcagattctgcattcatctttcaagcttggtttggtgttcgaaagattgtagaatacggaccaacgatta |
2059478 |
T |
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| Q |
337 |
t |
337 |
Q |
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| T |
2059477 |
t |
2059477 |
T |
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