View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5841_high_8 (Length: 347)
Name: NF5841_high_8
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 49988390 - 49988223
Alignment:
| Q |
171 |
gtacgagttcatcaattttctgaaattgatatggtcatcttgcattacagagaaaccagcg-aagatcaaacctactattttgagatctttacacaaatg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49988390 |
gtacgagttcatcaattttctgaaattgatatggtcatcttgcattacagagaaaccagcggaagatcaaacctactattttgagatctttacacaaatg |
49988291 |
T |
|
| Q |
270 |
atactaaacggaaacaagattagtggttacttgaataatttgtttatccctaaataagcactcctatg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49988290 |
atactaaacggaaacaagattagtggttacttgaataatttgtttatccctaaataagcactcctatg |
49988223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 49988621 - 49988477
Alignment:
| Q |
18 |
attctgaagttttcctttcatat--tacatcatctaaattttcctctttctaatgaatggaaacattgcctgatagctttaaaaacgtttcaacactgac |
115 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49988621 |
attctgaaattttcctttcatatattacatcatctaaattttcctctttctaatgaatggaaacattgcctgatagctttaaaaacgtttcaacactgac |
49988522 |
T |
|
| Q |
116 |
atacacatgtgatgaaaggtggaatgaatttcatcattcacataa |
160 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49988521 |
atacacatgtgatgaaaggttgaatgaatttcatcattcacataa |
49988477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 42297378 - 42297458
Alignment:
| Q |
164 |
agctcatgtacgagttcatcaattttctgaaattgatatggtcatcttgcattacagagaaaccagcgaagatcaaaccta |
244 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| || |||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
42297378 |
agctcatgtacgagttcatcgattttccgaaattgatacggccatcttgcattataaagaaattggcgaagatcaaaccta |
42297458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University