View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_low_1 (Length: 615)
Name: NF5841_low_1
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 44375788 - 44375183
Alignment:
| Q |
18 |
caacaaccattcccatcgttcctcctttattacccaacaaaaccaccgaagttaaaagtgtaatgatcatatatttaatcatg----ttttgcccgttaa |
113 |
Q |
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| T |
44375788 |
caacaaccattcccatcgttcctcctttattacccaacaaaaccaccgaagttaaaagtgtaatgatcgtatatttaatcatgcatgtttcgcccgttaa |
44375689 |
T |
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| Q |
114 |
aattgtaggggtcgtatatttaatcccgtgaaatttgctaatagataaaaactacctattttttgaattaggtcaatcaatttggtcttaannnnnnnn- |
212 |
Q |
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| T |
44375688 |
aattgtaggggtcgtatatttaatcccgtgaaatttgctaatagataaaaactaccttttttttgaattaggtcaatcaatttggtcttaattttttttt |
44375589 |
T |
|
| Q |
213 |
acaagcaatttggtcttaatattagctcgtatctaatttactcttaaattaattcat--------aaattaggccctaaattacatcgcttagcaaatta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44375588 |
acaagcaatttggtcttaatattagctcgtatctaatttactgttaaattatttcatttactgataaattaggccctaaattacatcgcttagcaaatta |
44375489 |
T |
|
| Q |
305 |
cataactcaactcttcatactacatttcttcnnnnnnnnnnnnnn--------ctcttcctactacattgcgtcnnnnnnngacttcctactatacatat |
396 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44375488 |
cataactcaactcttcatactacatttcttcttcttcttcaaaaaaaaaaaaactcttcctactacattgcgtcaaaaaaagacttcctactatacatat |
44375389 |
T |
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| Q |
397 |
tttgatacactacactcgcagaaactaatcatgaacacacatgaacacgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggaaga |
496 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44375388 |
tttgatgcactacactcgcagaaactaatcatgaacacacatgaacacgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggtaga |
44375289 |
T |
|
| Q |
497 |
aatcacaaaagctcaaccatttatgtacatgtacaatgtactaagtgagagagatattgtgcattcagtcattcacattaaggtcactaccatctatgcc |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375288 |
aatcacaaaagctcaaccatttatgtacatgtacaatgtactaagtgagagagatattgtgcattcagtcattcacattaaggtcactaccatctatgcc |
44375189 |
T |
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| Q |
597 |
tatgct |
602 |
Q |
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|||||| |
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| T |
44375188 |
tatgct |
44375183 |
T |
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