View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_low_12 (Length: 251)
Name: NF5841_low_12
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 26352854 - 26353088
Alignment:
| Q |
16 |
gaaaagaagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcgg |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26352854 |
gaaaaaaagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctac-taaaagactcaagttcgg |
26352952 |
T |
|
| Q |
116 |
tcccttcacatttactcaccactactaattactaccgatgaaagctattatggagcacagtttttacaagaaaaaaggcatattatacggagcattcaga |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26352953 |
tcccttcacatttactcaccgctactaattactaccgatgaaagctattatggagcacagtttgtacaagaaaaaaggcatattatacggagcattcaga |
26353052 |
T |
|
| Q |
216 |
aaatcgtgagaaaaatgaaagatgatgcagaaagaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26353053 |
aaatcgtgagaaaaatgaaagatgatgcagaaagaa |
26353088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 9817138 - 9816996
Alignment:
| Q |
22 |
aagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtccctt |
121 |
Q |
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|||||||||||||||||| ||||||| || |||||||||||| |||| ||||||||||||||||||||||||| ||| || |||| ||| ||||||| |
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| T |
9817138 |
aagtgatactctagattaagctcttcatatctcaaaatcaatattttcactgacttcaatattgccatgatctacataatagcttcaacttcagtccctt |
9817039 |
T |
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| Q |
122 |
cacattta-ctcaccactactaattactaccgatgaaagctat |
163 |
Q |
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| T |
9817038 |
tatatttatttaactactactaatgacaaccaatgaaagctat |
9816996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 1719259 - 1719083
Alignment:
| Q |
21 |
gaagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtccct |
120 |
Q |
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||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| || ||| ||||| |||||| |
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| T |
1719259 |
gaagtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtccct |
1719160 |
T |
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| Q |
121 |
tcacatttactcacc-actactaattactaccgatgaaagctattatggagcacagtttttacaagaaaaaaggcat |
196 |
Q |
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||||||||| ||||| ||||||| |||||||| ||||||||| ||||| |||||| || ||||||||||||||||| |
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| T |
1719159 |
tcacatttagtcacctactactatttactaccaatgaaagctgttatgtagcacatgttgtacaagaaaaaaggcat |
1719083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 10613544 - 10613488
Alignment:
| Q |
75 |
cttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttact |
131 |
Q |
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||||||||||| | |||||||| ||| || ||||| ||| ||||||||||||||||| |
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| T |
10613544 |
cttcaatattgtcgtgatctacttaataggctcaacttcagtcccttcacatttact |
10613488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 26649249 - 26649024
Alignment:
| Q |
22 |
aagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtccctt |
121 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||| | ||| |||||| ||||| ||||||| |
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| T |
26649249 |
aagtgatactccagattatgctcttcatataacaaaatcgatatcgtcattggcttcaatattgccatgatctgcataacagactctagttcagtccctt |
26649150 |
T |
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| Q |
122 |
cacatttactcaccactactaattactaccgatgaaagctattatggagcacagtttttacaagaaaaaaggca-tattatacggagcattcagaaaatc |
220 |
Q |
| |
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||| |||| || |||||| |||||| || | ||||||||||||||| | ||||| || |||||||| |||| || ||||||| | | || ||| ||||| |
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| T |
26649149 |
cacgtttagtcgccactaataattattatcaatgaaagctattatgtatcacaggttatacaagaataaagacactattatatgaaaca-gcag-aaatc |
26649052 |
T |
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| Q |
221 |
gtgagaaaaatgaaagatgatgcagaaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
26649051 |
atgagaaaaatgaaagatgatgcagaaa |
26649024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 20014183 - 20014410
Alignment:
| Q |
22 |
aagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtccctt |
121 |
Q |
| |
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||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||| ||| |||||| |
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| T |
20014183 |
aagtgatactctaaactatgcttttcatataacaaaatcaatatcttcattgacttcaatatttccatgatcttcataacaga------ttcattccctt |
20014276 |
T |
|
| Q |
122 |
cacatttactcaccactactaattactaccgatgaaagctattatggagcacagtttttacaaga----aaaaaggca-tattatacggagcattcagaa |
216 |
Q |
| |
|
||||| || |||||||||||| |||||||| ||||| |||||| || ||||||| || ||||||| ||||||||| ||||||||| | || ||||| |
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| T |
20014277 |
cacatgtaatcaccactactagttactaccaatgaaggctattttgtagcacaggttgtacaagaaaagaaaaaggcactattatacgaaaca-gcagaa |
20014375 |
T |
|
| Q |
217 |
aatcgtgagaaaaatgaaagatgatgcagaaagaa |
251 |
Q |
| |
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|||| |||||||||| ||||| | ||||||||||| |
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| T |
20014376 |
aatcatgagaaaaataaaagacggtgcagaaagaa |
20014410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 19836141 - 19836062
Alignment:
| Q |
52 |
aacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttact |
131 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||||||| | ||| || ||||| ||| ||||||||||||||||| |
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| T |
19836141 |
aacaaaatcaacaacttcactgacttcaatattgtcatgatcttcataataggctcaacttcagtcccttcacatttact |
19836062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 19904678 - 19904747
Alignment:
| Q |
27 |
atactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctac |
96 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| | | ||| |||||||| | |||||||||| |
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| T |
19904678 |
atactctagattatgctcttcatataacaaaatcaatatcataaatgaattcaatatcgtcatgatctac |
19904747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 20032281 - 20032362
Alignment:
| Q |
54 |
caaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttactcacc |
135 |
Q |
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|||||||| ||||||||||||||||||||||||||||| | | ||| || ||||| ||| |||||||||||||| ||||| |
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| T |
20032281 |
caaaatcagcatcttcattgacttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacatttattcacc |
20032362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 20034450 - 20034531
Alignment:
| Q |
54 |
caaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttactcacc |
135 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| | | ||| || ||||| ||| |||||||||||||| ||||| |
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|
| T |
20034450 |
caaaatcagcatcttcattgacttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacatttattcacc |
20034531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 19958468 - 19958393
Alignment:
| Q |
54 |
caaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacattta |
129 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| | | | | || ||||| ||| |||||||||||||| |
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| T |
19958468 |
caaaatcagtatcttcattgacttcaatattgccatgatttgcatcatagcctcaaattcaatcccttcacattta |
19958393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 19877609 - 19877677
Alignment:
| Q |
67 |
ttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttactcacc |
135 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| || | || |||||||||||||||||||||||| |
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| T |
19877609 |
ttcattgacttgaatattgccatgatatacataatagcgttaaactcggtcccttcacatttactcacc |
19877677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 20004305 - 20004347
Alignment:
| Q |
54 |
caaaatcaatatcttcattgacttcaatattgccatgatctac |
96 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
20004305 |
caaaatcaatataaccattgacttcaatattgccatgatctac |
20004347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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