View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_low_4 (Length: 376)
Name: NF5841_low_4
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 167 - 364
Target Start/End: Complemental strand, 46716004 - 46715808
Alignment:
| Q |
167 |
ggggttgcggcataaacctgttttgagagatcgtttgtttacagctgtgttggctggtgcttttcttcatggaggctatctcgtgtatccttttttctat |
266 |
Q |
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| T |
46716004 |
ggggttgcggcataaacctgttttgagagatcgtttgtttacagctgtgttggccggtgcttttcttcatggaggctatctcgtgtatccttttttctat |
46715905 |
T |
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| Q |
267 |
gtgatgctgctgcaatacaattatagggttgtataaaaatatactgtatactttagtatttctgtggaacttgtgctatactttatgtgtgactttat |
364 |
Q |
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| T |
46715904 |
gtgatgctgctgcaatacaattatagggttgtataaaaatatactgtatactttagtatttctgtggaacttgtgctata-tttatgtgtggctttat |
46715808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 46716161 - 46716093
Alignment:
| Q |
17 |
acaatggtcctcctctcaagttcctttttcctctcatatatgctcctgttctacctctaagttagtcac |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46716161 |
acaatggtcctcctctcaagttcctttttcctctcatatatgctcctgttctacctctaagttagtcac |
46716093 |
T |
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