View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5841_low_6 (Length: 354)
Name: NF5841_low_6
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5841_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 4624351 - 4624666
Alignment:
| Q |
14 |
agatcgaactaagatgctgacatgttcctgtcccgcaaattcggcaaaattttacttttagttgaatacttacatgtaataataactgtgaaattgttaa |
113 |
Q |
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| T |
4624351 |
agatcgaactaagatgccaacatgttcctgtcccgcaaattcggcaaaattttacttttagttgaatacttacatgtaataataactgtgaaattgttaa |
4624450 |
T |
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| Q |
114 |
tgttttgaccacacctcaagatatccctttcaaagaaataaaagaaatgaaccaaaattgattctgacaataaccaaacaccaaatcaatctggtcaaat |
213 |
Q |
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| T |
4624451 |
tgttttggccacacctcaagatatccctttcaaag---------aaatgaaccaaaattgattctgacaataaccaaacaccaaaacaatctggtcaaat |
4624541 |
T |
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| Q |
214 |
caaatttggtacatgataccaaacaacttgaaaggttgttaatgttaactctccttccccaaatccattccctatcaagggatggtaataaccaaattcc |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4624542 |
caaatttggtacatgataccaaacaacttgcaaggttgttaatgttaactctccttccccaactccattccctatcaagggatggtagtaaccaaattcc |
4624641 |
T |
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| Q |
314 |
aaaaagtgagagtgacatttgcaag |
338 |
Q |
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| T |
4624642 |
aaaaagtgagagtgacatttgcaag |
4624666 |
T |
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Back To:
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 24092853 - 24092902
Alignment:
| Q |
289 |
caagggatggtaataaccaaattccaaaaagtgagagtgacatttgcaag |
338 |
Q |
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| T |
24092853 |
caagggatggtagttaccaacttctaaaaagtgagagtgacatttgcaag |
24092902 |
T |
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