View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5842-Insertion-1 (Length: 740)

Name: NF5842-Insertion-1
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5842-Insertion-1
NF5842-Insertion-1
[»] chr1 (7 HSPs)
chr1 (8-694)||(13084396-13085076)
chr1 (462-542)||(34582661-34582741)
chr1 (462-534)||(26765962-26766033)
chr1 (650-731)||(29657435-29657516)
chr1 (650-734)||(35413094-35413178)
chr1 (671-733)||(10061661-10061723)
chr1 (663-736)||(4684534-4684607)
[»] chr8 (2 HSPs)
chr8 (654-736)||(5718407-5718489)
chr8 (652-734)||(38585046-38585128)
[»] chr5 (3 HSPs)
chr5 (650-736)||(3040216-3040302)
chr5 (655-736)||(25493885-25493966)
chr5 (470-542)||(18988768-18988840)
[»] chr2 (4 HSPs)
chr2 (651-736)||(14131222-14131307)
chr2 (664-736)||(4434366-4434438)
chr2 (660-734)||(13716676-13716750)
chr2 (651-733)||(20143037-20143119)
[»] scaffold0194 (1 HSPs)
scaffold0194 (650-732)||(27065-27147)
[»] chr7 (2 HSPs)
chr7 (651-733)||(46413700-46413782)
chr7 (468-571)||(3298231-3298337)
[»] chr4 (3 HSPs)
chr4 (655-733)||(42504155-42504233)
chr4 (676-736)||(24060642-24060702)
chr4 (670-736)||(30220765-30220831)
[»] chr6 (2 HSPs)
chr6 (462-546)||(7340637-7340720)
chr6 (652-733)||(3855694-3855774)
[»] chr3 (1 HSPs)
chr3 (479-542)||(6949729-6949792)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 694
Target Start/End: Original strand, 13084396 - 13085076
Alignment:
Q  8 aatactcttccctaacctaggatggagtatatttttacgtgaatgtgtttaatgatgtgtctgaataggaccatacgaatactgacttttccattcatga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13084396 aatactcttccctaacctaggatggagtatatttttacgtgaatgtgtttaatgatgtgtctgaataggaccatacgaatactgacttttccattcatga 13084495  T
Q  108 aaatgtaaacagtggacttctaaaaatttatgtttttgttggttagagtaaatttcagagtagaaccataaatgctcataaatacttatgctagttatag 207  Q
    ||||||| ||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13084496 aaatgtatacagtggacttctaaaa-tttat---tttgttggttagagtaaatttcagagtagaaccataaatgttcataaatacttatgctagttatag 13084591  T
Q  208 tgaatgataacaactattcgatagtgcacgtagacacattcacgtaaaatcaaacacttataacaatctcagtcgttcattgacatcatgcattataatt 307  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||    
T  13084592 tgaatgatgaaaactattcgatagtgcacgtagacacattcacgtaaaatcaaacacttataacaatctcagtcgttcattgacatcatgc------att 13084685  T
Q  308 ataacaatctcagtcattcattgacataatgcggttgaagttttaactgcgtcaaccacttataataaatttcatagaatcaccaaaaatcactgtgatt 407  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||    
T  13084686 ataacaatctcagtcattcattgacatcatgcggttgaagttttaactgcgtcaaccacttataataaatttcctagaatcaccaaaaatcattgtgttt 13084785  T
Q  408 ttgcaaaaactaatcttta--annnnnnnnnngctagtgtacgtctctttaaggatatttttaattaaaaaagtattcact-aaaaaagtttaataatta 504  Q
    ||| |||||||||||||||              | ||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  13084786 ttgaaaaaactaatctttattttattttgctaacgagtgtacttctctttaaggata--tttaattaaaaaagtattcactaaaaaaagtttaataatta 13084883  T
Q  505 aatttctggtgtattgaatgcataagttttcataaaaaattatctaatgttcttaaagagtgcaattcgaacattcattagtagttaccttctttaaaag 604  Q
    |||||| |||| ||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13084884 aatttcaggtgcatttaatgcataaattttcataaaaatttatctaaagttcttaaagagtgcaattcgaacattcattagtagttaccttctttaaaag 13084983  T
Q  605 atcta--atgttacagtgttatcgtgattttgacaaatctattga-tgtagggaaataatagatacaatgacaaaatgtattacgaaaatttc 694  Q
    |||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||    
T  13084984 atctacgatattacagtgttatcgtgattttgacaaatctattgattgtagggaaataatagatacaatgacaaaatgtatcaagaaaatttc 13085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 462 - 542
Target Start/End: Original strand, 34582661 - 34582741
Alignment:
Q  462 atttttaattaaaaaagtattcactaaaaaagtttaataattaaatttctggtgtattgaatgcataagttttcataaaaa 542  Q
    ||||| |||||||||| |||||| | ||||||| ||||  || |||||||| || ||||||||||||||||||||||||||    
T  34582661 attttaaattaaaaaattattcaatgaaaaagtataatgcttcaatttctgatgcattgaatgcataagttttcataaaaa 34582741  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 462 - 534
Target Start/End: Original strand, 26765962 - 26766033
Alignment:
Q  462 atttttaattaaaaaagtattcactaaaaaagtttaataattaaatttctggtgtattgaatgcataagtttt 534  Q
    ||||||||| |||||| |||||| | ||||||||||||| || |||||||| || ||||||||||||||||||    
T  26765962 atttttaat-aaaaaactattcattgaaaaagtttaatatttcaatttctgatggattgaatgcataagtttt 26766033  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 731
Target Start/End: Complemental strand, 29657516 - 29657435
Alignment:
Q  650 tagggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattaca 731  Q
    ||||||||| ||||||||| ||||||| | ||| | ||||||||| |  |||| ||||||||| ||| ||||||||||||||    
T  29657516 tagggaaatgatagatacagtgacaaattttatcaagaaaatttcaagacagtgtatttgctaacacctttccttaattaca 29657435  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 650 - 734
Target Start/End: Complemental strand, 35413178 - 35413094
Alignment:
Q  650 tagggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacac 734  Q
    ||||||||| ||||||| ||||||||||| ||| | ||||||||| |   ||| |||||| || ||| |||||||||||||||||    
T  35413178 tagggaaatgatagatataatgacaaaatttatcaagaaaatttcaagagagtgtatttgttaacacctttccttaattacacac 35413094  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 671 - 733
Target Start/End: Complemental strand, 10061723 - 10061661
Alignment:
Q  671 gacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacaca 733  Q
    |||||||| ||| | ||||||||| |  |||| ||||||||| ||||||||||||||||||||    
T  10061723 gacaaaatttatcaagaaaatttcaagacagtttatttgctaacacatttccttaattacaca 10061661  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 736
Target Start/End: Complemental strand, 4684607 - 4684534
Alignment:
Q  663 gatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    ||||||| ||||||||| || | |||||||| ||  ||  |||||||||| ||| |||||||||||||||||||    
T  4684607 gatacaacgacaaaatgcatcaagaaaattttcaaacaacatatttgctaacacctttccttaattacacacca 4684534  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 654 - 736
Target Start/End: Original strand, 5718407 - 5718489
Alignment:
Q  654 gaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    ||||| ||||||||||||||||| | ||| | ||||||||  |  |||| ||||||||| |||||||||||||||||||||||    
T  5718407 gaaatgatagatacaatgacaaactatatcaagaaaattttaagacagtgtatttgctaacacatttccttaattacacacca 5718489  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 734
Target Start/End: Original strand, 38585046 - 38585128
Alignment:
Q  652 gggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacac 734  Q
    ||||||| |||||| |||||||||||| ||| | ||||||||| |  || | ||||||||| ||| |||| ||||||||||||    
T  38585046 gggaaatgatagatccaatgacaaaatttatcaagaaaatttcaaagcaatgtatttgctaacacttttctttaattacacac 38585128  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 650 - 736
Target Start/End: Original strand, 3040216 - 3040302
Alignment:
Q  650 tagggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    ||||||||||||||| ||| ||||||||| ||| | ||||||||  |  |||| ||||||||| ||| |||||||||||||||||||    
T  3040216 tagggaaataatagacacagtgacaaaatttatcaagaaaattttaagacagtgtatttgctaacacctttccttaattacacacca 3040302  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 736
Target Start/End: Complemental strand, 25493966 - 25493885
Alignment:
Q  655 aaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    |||| ||||||||| |||||| ||||||   ||||||||| |  ||||||||||| ||  ||||||||||||||||||||||    
T  25493966 aaatgatagatacagtgacaacatgtatccagaaaatttcaagacagtatatttgttaatacatttccttaattacacacca 25493885  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 542
Target Start/End: Original strand, 18988768 - 18988840
Alignment:
Q  470 ttaaaaaagtattcactaaaaaagtttaataattaaatttctggtgtattgaatgcataagttttcataaaaa 542  Q
    |||||||  ||||||  |||||||| ||||| |||||||||   || ||||||||||||||||||||||||||    
T  18988768 ttaaaaatctattcatcaaaaaagtctaatacttaaatttccaatgcattgaatgcataagttttcataaaaa 18988840  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 651 - 736
Target Start/End: Complemental strand, 14131307 - 14131222
Alignment:
Q  651 agggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    |||||||| ||||||||| ||||||||| ||| | ||||||||  |   ||| ||||||||| |||||||||||||||||||||||    
T  14131307 agggaaatgatagatacagtgacaaaatttatgaagaaaattttaagatagtgtatttgctaacacatttccttaattacacacca 14131222  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 736
Target Start/End: Complemental strand, 4434438 - 4434366
Alignment:
Q  664 atacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    ||||| ||||||| ||||||| ||||||||| |  || ||||||||| | ||||||| |||||||||||||||    
T  4434438 atacagtgacaaactgtattaagaaaatttcaaaacaatatatttgccaacacatttacttaattacacacca 4434366  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 734
Target Start/End: Original strand, 13716676 - 13716750
Alignment:
Q  660 atagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacac 734  Q
    ||||||||| ||||||||| ||| | ||||||||| |  |||| ||||||||| ||| ||| |||||||||||||    
T  13716676 atagatacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacac 13716750  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 733
Target Start/End: Complemental strand, 20143119 - 20143037
Alignment:
Q  651 agggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacaca 733  Q
    |||||||| ||||||||| ||||||||| ||| | ||||||||| |   ||| ||||| ||| ||| ||||||||||||||||    
T  20143119 agggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagatagtgtattttctaacacctttccttaattacaca 20143037  T

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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 732
Target Start/End: Original strand, 27065 - 27147
Alignment:
Q  650 tagggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacac 732  Q
    ||||||||| ||||||||| ||||||||| ||| | ||||||||| |  |||| |||||| || ||| |||||||||||||||    
T  27065 tagggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaattacac 27147  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 733
Target Start/End: Original strand, 46413700 - 46413782
Alignment:
Q  651 agggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacaca 733  Q
    |||||||| ||||||||| ||||||||| |||||  |||||||| |  |||| |||||| || ||| ||||||||||||||||    
T  46413700 agggaaatgatagatacattgacaaaatttattaaaaaaatttcaagacagtgtatttgttaacacctttccttaattacaca 46413782  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 571
Target Start/End: Original strand, 3298231 - 3298337
Alignment:
Q  468 aattaaaaaagtattcactaaaaaagtttaataattaaatttctggtgtattgaatgcataagttttcataaaaaatta---tctaatgttcttaaagag 564  Q
    |||||| ||| |||||| | |||||| || ||| || |||||||| || ||||||||| ||||||| |||||||| |||   ||||| ||||||||||||    
T  3298231 aattaagaaactattcattgaaaaagcttcatatttcaatttctgatgcattgaatgcttaagtttccataaaaatttaacatctaaagttcttaaagag 3298330  T
Q  565 tgcaatt 571  Q
    || ||||    
T  3298331 tgtaatt 3298337  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 733
Target Start/End: Original strand, 42504155 - 42504233
Alignment:
Q  655 aaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacaca 733  Q
    |||| ||||||||||||||||||||||| | ||||||||  |  |||| |||||| || ||| ||||||||||||||||    
T  42504155 aaatgatagatacaatgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacacctttccttaattacaca 42504233  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 736
Target Start/End: Complemental strand, 24060702 - 24060642
Alignment:
Q  676 aatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    ||||||||| ||||||||  |  |||| ||||||||| |||||||||||||||||||||||    
T  24060702 aatgtattaagaaaattttaaaacagtgtatttgctaacacatttccttaattacacacca 24060642  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 670 - 736
Target Start/End: Complemental strand, 30220831 - 30220765
Alignment:
Q  670 tgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacacacca 736  Q
    ||||||||||||| | ||||||||  |  |||| ||||||||| ||| |||||||||||||||||||    
T  30220831 tgacaaaatgtatcaagaaaattttaagacagtgtatttgctaacacttttccttaattacacacca 30220765  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 546
Target Start/End: Original strand, 7340637 - 7340720
Alignment:
Q  462 atttttaattaaaaaagtattcactaaaaaagtttaataattaaatttctggtgtattgaatgcataagttttcataaaaaatta 546  Q
    ||||| |||||||||| |||||| | ||||||| ||||| |||| ||| || || ||| |||||||||||||||| |||||||||    
T  7340637 attttcaattaaaaaattattcattgaaaaagtataatacttaatttt-tgatgcattaaatgcataagttttcacaaaaaatta 7340720  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 733
Target Start/End: Original strand, 3855694 - 3855774
Alignment:
Q  652 gggaaataatagatacaatgacaaaatgtattacgaaaatttccatccagtatatttgctagcacatttccttaattacaca 733  Q
    ||||||| ||||||||| ||||||||| ||| | ||||||||| |  |||| |||| |||| ||| ||||||||||||||||    
T  3855694 gggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatt-gctaacacctttccttaattacaca 3855774  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 542
Target Start/End: Original strand, 6949729 - 6949792
Alignment:
Q  479 tattcactaaaaaagtttaataattaaatttctggtgtattgaatgcataagttttcataaaaa 542  Q
    |||||| | ||||||||||||| | | ||||||| || ||||||||||||||||||||| ||||    
T  6949729 tattcattgaaaaagtttaatattaagatttctgatgaattgaatgcataagttttcattaaaa 6949792  T

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