View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5842-Insertion-2 (Length: 374)

Name: NF5842-Insertion-2
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5842-Insertion-2
NF5842-Insertion-2
[»] chr7 (1 HSPs)
chr7 (3-374)||(3087136-3087507)
[»] chr6 (12 HSPs)
chr6 (3-190)||(4299050-4299237)
chr6 (118-186)||(4557956-4558024)
chr6 (3-186)||(4622856-4623039)
chr6 (118-186)||(4586467-4586535)
chr6 (134-180)||(4612957-4613003)
chr6 (137-190)||(4626801-4626854)
chr6 (3-39)||(4259534-4259570)
chr6 (8-55)||(4255985-4256032)
chr6 (3-60)||(3172457-3172514)
chr6 (129-186)||(4571814-4571871)
chr6 (3-92)||(4626667-4626756)
chr6 (128-180)||(4599011-4599063)
[»] chr8 (1 HSPs)
chr8 (118-186)||(16685519-16685587)
[»] scaffold0477 (1 HSPs)
scaffold0477 (137-178)||(3930-3971)
[»] chr5 (1 HSPs)
chr5 (3-48)||(24107091-24107136)
[»] scaffold0288 (1 HSPs)
scaffold0288 (8-60)||(3077-3129)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 3 - 374
Target Start/End: Original strand, 3087136 - 3087507
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatc 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087136 tcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatc 3087235  T
Q  103 ttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc-taaaatctcatctgc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||| |||||| |||    
T  3087236 ttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactctggcgtcagaaactctcatatgc 3087335  T
Q  202 ttgtcataattatagaagaagtcaatagcttactaggaatacactctctaacgctttctaacacacnnnnnnnattggttaacatttatgagtctcgtca 301  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||       | ||||| |||||||||||| |||| |    
T  3087336 ttgtcataattatagaagaagtcaatagcttgctaggaatacactctc-aacgctttctaacacacttttttcactggtttacatttatgagtttcgtta 3087434  T
Q  302 aattatgtgggactcatgaatgtaaatcagaaagagtgtgttgaaaagtgtttgacaaagagttcgttactaa 374  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  3087435 aattatgtgggactcatgaatgttaatcagaaagagtgcgttgaaaagtgtttgacaaagagtttgttactaa 3087507  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 4299237 - 4299050
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatc 102  Q
    |||| |||||||||||||||||||||||||| ||||| | ||||||||| |||||||| || |||||  || |||||||| |||||||||  |||  |||    
T  4299237 tcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaattctaccatgacatc 4299138  T
Q  103 ttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 190  Q
     ||| ||| |  |  |||||| | |||||  ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  4299137 atttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaa 4299050  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 4557956 - 4558024
Alignment:
Q  118 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 186  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  4557956 ccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtc 4558024  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 4622856 - 4623039
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatc 102  Q
    ||||| ||||| |||||||||||| |||||| ||||| ||||||||||||| |||||| || |  ||  || ||||||||| ||||||||  |||  |||    
T  4622856 tcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaattctaccatgacatc 4622955  T
Q  103 ttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 186  Q
     ||| | |||  || |||||| | |||||||| |||||| |  |||||||||| |||||| |||| ||||||||||| ||||||    
T  4622956 atttggctctgtaatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtc 4623039  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 4586467 - 4586535
Alignment:
Q  118 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 186  Q
    |||||| | |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  4586467 ccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtc 4586535  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 4613003 - 4612957
Alignment:
Q  134 agatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 180  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4613003 agatccttcagtcgaaagttctgcaatccttgaatacagtccacttt 4612957  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 4626801 - 4626854
Alignment:
Q  137 tccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 190  Q
    |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||    
T  4626801 tccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaa 4626854  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 4259570 - 4259534
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaa 39  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4259570 tcattacatcactctcaagttcatcataagtgttaaa 4259534  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 4256032 - 4255985
Alignment:
Q  8 acatcactctcaagttcatcataagtgttaaagataatagcagaggct 55  Q
    ||||| ||||||||||||| |||||||||||| | |||||||||||||    
T  4256032 acatcgctctcaagttcattataagtgttaaaaacaatagcagaggct 4255985  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 3172457 - 3172514
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 60  Q
    |||| ||||||||||||||||||| | ||||||| || | ||||||||| ||||||||    
T  3172457 tcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtg 3172514  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 4571814 - 4571871
Alignment:
Q  129 caggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 186  Q
    |||||| |||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  4571814 caggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtc 4571871  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 4626667 - 4626756
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattcta 92  Q
    |||| ||||||| |||||||||||| |||||||| || | |||||| || ||| |||| || |||||  || ||||||||| ||||||||    
T  4626667 tcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattcta 4626756  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 4599011 - 4599063
Alignment:
Q  128 tcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 180  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  4599011 tcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctacttt 4599063  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 16685587 - 16685519
Alignment:
Q  118 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 186  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  16685587 ccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtc 16685519  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 3971 - 3930
Alignment:
Q  137 tccttcagtcgaaagttctgcaatcctggaatacagtctact 178  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctact 3930  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 24107091 - 24107136
Alignment:
Q  3 tcatcacatcactctcaagttcatcataagtgttaaagataatagc 48  Q
    |||| ||||||||||||||||||||||||| |||||| | ||||||    
T  24107091 tcattacatcactctcaagttcatcataagcgttaaaaacaatagc 24107136  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 3129 - 3077
Alignment:
Q  8 acatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 60  Q
    ||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||    
T  3129 acatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtg 3077  T

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