View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5842-Insertion-3 (Length: 370)
Name: NF5842-Insertion-3
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5842-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 4031115 - 4030754
Alignment:
| Q |
9 |
aaaaccttgtccatttaatcaagagtggggacagataccgtagttttattgtgacttgtacaaacttttgttctaattatagaaaatggttttagatgca |
108 |
Q |
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| T |
4031115 |
aaaaccttgtccatttaatcaagagtggggacagataccgtagttttattgtgaattgtacaaacttttgttctaattatagaaaatggttttagatgca |
4031016 |
T |
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| Q |
109 |
aaatgaatgcattaataaagtcacaacagtttgagtttttaatctttgttttcttccttgsaaagattyttgagtactcttggattttcagttcagacaa |
208 |
Q |
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| T |
4031015 |
aaatgaatgcattaataaagtcacaacagtttgagtttttaatctttgttttcttccttgcaaagattcttgagtactcttggattttcagttcagacaa |
4030916 |
T |
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| Q |
209 |
aaatccgagtttcttactgaaaaatgatgctttctgtttcatgttttatttcatcttattatagactatactttctttaatatgaagcaatgtgtctcaa |
308 |
Q |
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| T |
4030915 |
aaatccgagtttcttactgaaaaatgatgctttctgtttcatgttttatttcatcttattatagactatactttctttaatatgaagcaatgtgtctcaa |
4030816 |
T |
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| Q |
309 |
caagcttcacaatatcttttaaattgacctggaccccactataattgtattcatactatttc |
370 |
Q |
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| T |
4030815 |
caagcttcacaatatcttttaaattgacctggaccccactataattgtattcatactatttc |
4030754 |
T |
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