View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5842-Insertion-5 (Length: 238)
Name: NF5842-Insertion-5
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5842-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-123
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 50645207 - 50645438
Alignment:
| Q |
8 |
attcatttttcaaccaccttatttgcttatttttcatttcaaaaggagtatacatggtcatctcacatcaaatgttaaagttcttactaa-gttatacat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50645207 |
attcatttttcaaccaccttatttgcttatttttcatttcaaaaggagtatacatggtcatctcacatcaaatgttaaagttcttactaatgttatacat |
50645306 |
T |
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| Q |
107 |
ttcagcacatgctcacaactcacaactaagaaacagtgggtttatctagcctggctaaaaagaatgctctagtccactactattagcttgtcttttcttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50645307 |
ttcagcacatgctcacaactcacaactaagaaacagtgggtttatctagcctggctaaaaagaatgctctagtccactactattagcttgtcttttcttt |
50645406 |
T |
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| Q |
207 |
ataactactattactggtactcatttctstta |
238 |
Q |
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|||||||||||||||||||||||||||| ||| |
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| T |
50645407 |
ataactactattactggtactcatttctgtta |
50645438 |
T |
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