View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5842_low_1 (Length: 529)

Name: NF5842_low_1
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5842_low_1
NF5842_low_1
[»] chr4 (21 HSPs)
chr4 (3-513)||(1747205-1747723)
chr4 (1-82)||(35723373-35723453)
chr4 (1-47)||(40613441-40613487)
chr4 (8-47)||(8423740-8423779)
chr4 (1-47)||(23293008-23293054)
chr4 (1-47)||(36635315-36635361)
chr4 (2-47)||(7012058-7012103)
chr4 (2-81)||(22234880-22234958)
chr4 (28-88)||(44132627-44132685)
chr4 (9-80)||(38148716-38148785)
chr4 (1-47)||(903913-903959)
chr4 (1-47)||(20743300-20743346)
chr4 (9-47)||(22440622-22440660)
chr4 (8-45)||(23861455-23861492)
chr4 (2-47)||(24343499-24343544)
chr4 (11-52)||(30522932-30522973)
chr4 (1-45)||(847942-847986)
chr4 (11-47)||(16189710-16189746)
chr4 (1-33)||(17345451-17345483)
chr4 (1-45)||(20521873-20521917)
chr4 (13-45)||(34200295-34200327)
[»] chr7 (28 HSPs)
chr7 (1-80)||(32308111-32308188)
chr7 (3-81)||(19206043-19206119)
chr7 (1-88)||(6630895-6630980)
chr7 (3-47)||(29787391-29787435)
chr7 (4-81)||(30731031-30731104)
chr7 (1-46)||(11722121-11722166)
chr7 (7-74)||(5548673-5548738)
chr7 (1-71)||(20549782-20549850)
chr7 (1-67)||(22868033-22868097)
chr7 (1-87)||(24339633-24339717)
chr7 (1-74)||(22602707-22602778)
chr7 (5-47)||(23191891-23191933)
chr7 (1-47)||(25481893-25481939)
chr7 (1-47)||(26733295-26733341)
chr7 (1-47)||(27945032-27945078)
chr7 (3-44)||(28155563-28155604)
chr7 (3-47)||(24289813-24289857)
chr7 (1-39)||(1433445-1433483)
chr7 (1-43)||(2425759-2425801)
chr7 (1-43)||(5307251-5307293)
chr7 (1-74)||(21828402-21828473)
chr7 (1-47)||(22484016-22484062)
chr7 (9-47)||(32287485-32287523)
chr7 (2-86)||(23128646-23128728)
chr7 (1-42)||(25791644-25791685)
chr7 (1-81)||(26329372-26329450)
chr7 (18-86)||(35297657-35297723)
chr7 (15-47)||(2424619-2424651)
[»] chr8 (20 HSPs)
chr8 (2-81)||(24362192-24362269)
chr8 (5-81)||(11927076-11927150)
chr8 (2-47)||(34897077-34897122)
chr8 (2-43)||(39954305-39954346)
chr8 (1-87)||(15816113-15816197)
chr8 (1-71)||(31109518-31109586)
chr8 (2-45)||(31236601-31236644)
chr8 (2-71)||(13844596-13844663)
chr8 (1-43)||(27101506-27101548)
chr8 (10-47)||(18067956-18067993)
chr8 (1-45)||(13436988-13437032)
chr8 (1-45)||(22651967-22652011)
chr8 (8-47)||(4611532-4611571)
chr8 (1-71)||(4786338-4786406)
chr8 (3-81)||(11944658-11944734)
chr8 (2-45)||(27213539-27213582)
chr8 (5-47)||(7658458-7658500)
chr8 (1-47)||(29510326-29510372)
chr8 (16-71)||(3025557-3025610)
chr8 (10-81)||(25566841-25566910)
[»] chr6 (35 HSPs)
chr6 (1-71)||(19040343-19040411)
chr6 (1-87)||(10339109-10339194)
chr6 (2-87)||(26562681-26562764)
chr6 (1-71)||(7265593-7265661)
chr6 (1-74)||(9027169-9027240)
chr6 (1-47)||(9658870-9658916)
chr6 (1-81)||(5000616-5000694)
chr6 (1-45)||(9629374-9629418)
chr6 (1-88)||(16766688-16766773)
chr6 (1-41)||(20371138-20371178)
chr6 (1-47)||(17341686-17341732)
chr6 (10-74)||(9025491-9025553)
chr6 (2-43)||(10842524-10842565)
chr6 (1-40)||(5732539-5732578)
chr6 (2-45)||(7377971-7378014)
chr6 (3-81)||(8931592-8931668)
chr6 (1-87)||(10294098-10294182)
chr6 (2-45)||(30866168-30866211)
chr6 (1-47)||(7977852-7977898)
chr6 (1-47)||(7996400-7996446)
chr6 (1-47)||(8022355-8022401)
chr6 (3-88)||(9107353-9107436)
chr6 (1-47)||(12696315-12696361)
chr6 (1-47)||(13851727-13851773)
chr6 (1-43)||(17841615-17841657)
chr6 (1-47)||(19044455-19044501)
chr6 (1-43)||(33001315-33001357)
chr6 (1-47)||(34595125-34595171)
chr6 (5-46)||(6665208-6665249)
chr6 (2-47)||(13360394-13360439)
chr6 (10-47)||(32511688-32511725)
chr6 (1-81)||(34073337-34073415)
chr6 (1-41)||(21424830-21424870)
chr6 (2-42)||(25096415-25096455)
chr6 (11-47)||(31579247-31579283)
[»] chr1 (45 HSPs)
chr1 (5-87)||(25361881-25361961)
chr1 (1-47)||(2896143-2896189)
chr1 (1-47)||(10474999-10475045)
chr1 (1-47)||(36878452-36878498)
chr1 (2-74)||(9828036-9828106)
chr1 (10-82)||(34371714-34371783)
chr1 (1-47)||(398787-398833)
chr1 (1-74)||(7918208-7918279)
chr1 (1-47)||(17831553-17831599)
chr1 (1-81)||(10572579-10572657)
chr1 (2-47)||(12443482-12443527)
chr1 (1-45)||(6427341-6427385)
chr1 (1-80)||(17754302-17754379)
chr1 (2-45)||(1262876-1262919)
chr1 (1-47)||(113290-113336)
chr1 (1-51)||(6415019-6415069)
chr1 (1-47)||(34298427-34298473)
chr1 (14-87)||(44482234-44482305)
chr1 (2-47)||(10233245-10233290)
chr1 (2-47)||(25098577-25098622)
chr1 (1-45)||(609482-609526)
chr1 (3-47)||(5376522-5376566)
chr1 (1-44)||(9709811-9709854)
chr1 (8-47)||(26238134-26238173)
chr1 (5-71)||(39953146-39953210)
chr1 (1-47)||(1486731-1486777)
chr1 (5-47)||(5898288-5898330)
chr1 (1-51)||(9103631-9103681)
chr1 (1-47)||(19562643-19562689)
chr1 (9-47)||(20157372-20157410)
chr1 (1-47)||(27471588-27471634)
chr1 (2-71)||(29163381-29163448)
chr1 (1-47)||(31015034-31015080)
chr1 (1-47)||(40285676-40285722)
chr1 (5-43)||(41877496-41877534)
chr1 (1-38)||(9690303-9690340)
chr1 (2-47)||(21378570-21378615)
chr1 (2-43)||(21530681-21530722)
chr1 (1-46)||(36905988-36906033)
chr1 (10-47)||(40181871-40181908)
chr1 (3-47)||(13436451-13436495)
chr1 (11-47)||(19909298-19909334)
chr1 (3-74)||(34712380-34712449)
chr1 (1-45)||(38078685-38078729)
chr1 (3-47)||(38503313-38503357)
[»] chr2 (23 HSPs)
chr2 (2-47)||(21616754-21616799)
chr2 (10-80)||(44860320-44860388)
chr2 (1-47)||(21782840-21782886)
chr2 (1-47)||(37411266-37411312)
chr2 (9-87)||(18889575-18889651)
chr2 (1-47)||(23718017-23718063)
chr2 (1-47)||(24105689-24105735)
chr2 (5-47)||(28677904-28677946)
chr2 (1-69)||(31808068-31808134)
chr2 (7-47)||(18276518-18276558)
chr2 (1-45)||(18420458-18420502)
chr2 (3-42)||(31284041-31284080)
chr2 (5-47)||(10535781-10535823)
chr2 (1-47)||(24894380-24894426)
chr2 (1-47)||(30404872-30404918)
chr2 (2-47)||(19573970-19574015)
chr2 (7-81)||(36409619-36409689)
chr2 (2-47)||(42832298-42832343)
chr2 (1-45)||(896202-896246)
chr2 (1-74)||(2331785-2331854)
chr2 (3-47)||(21374721-21374765)
chr2 (1-88)||(36756327-36756412)
chr2 (1-45)||(37558968-37559012)
[»] chr5 (27 HSPs)
chr5 (1-88)||(3966494-3966579)
chr5 (1-47)||(28588696-28588742)
chr5 (4-47)||(27932229-27932272)
chr5 (1-87)||(39698532-39698616)
chr5 (1-43)||(27144454-27144496)
chr5 (1-42)||(17123039-17123080)
chr5 (1-45)||(31084314-31084358)
chr5 (1-44)||(2436913-2436956)
chr5 (1-115)||(6035474-6035585)
chr5 (1-44)||(26716135-26716178)
chr5 (1-44)||(26985875-26985918)
chr5 (1-47)||(6247613-6247659)
chr5 (1-47)||(6326319-6326365)
chr5 (1-43)||(14674260-14674302)
chr5 (5-43)||(19579696-19579734)
chr5 (1-47)||(21191078-21191124)
chr5 (1-35)||(38816729-38816763)
chr5 (10-47)||(6471911-6471948)
chr5 (4-45)||(9449463-9449504)
chr5 (11-71)||(30502388-30502446)
chr5 (11-71)||(30542731-30542789)
chr5 (8-84)||(32766930-32767004)
chr5 (2-47)||(34879342-34879387)
chr5 (2-43)||(35017029-35017070)
chr5 (11-75)||(36838544-36838606)
chr5 (1-72)||(11685930-11685999)
chr5 (1-45)||(30098317-30098361)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-47)||(92798-92844)
[»] chr3 (37 HSPs)
chr3 (1-82)||(8039824-8039903)
chr3 (1-47)||(8383248-8383294)
chr3 (1-72)||(26290362-26290431)
chr3 (2-45)||(5407271-5407314)
chr3 (1-47)||(4987313-4987359)
chr3 (2-71)||(49505154-49505221)
chr3 (2-47)||(12703999-12704044)
chr3 (1-87)||(25064900-25064982)
chr3 (1-45)||(5441055-5441099)
chr3 (8-71)||(7928448-7928509)
chr3 (3-47)||(34307802-34307846)
chr3 (1-45)||(40052323-40052367)
chr3 (1-52)||(2620070-2620121)
chr3 (1-44)||(9800031-9800074)
chr3 (8-74)||(11313797-11313861)
chr3 (4-47)||(14979175-14979218)
chr3 (1-44)||(24633757-24633800)
chr3 (1-47)||(1438795-1438841)
chr3 (1-47)||(4990989-4991035)
chr3 (1-47)||(10954943-10954989)
chr3 (1-47)||(11493383-11493429)
chr3 (1-47)||(11610512-11610558)
chr3 (2-87)||(14209105-14209188)
chr3 (1-47)||(21479109-21479155)
chr3 (1-47)||(21720755-21720801)
chr3 (1-47)||(26508101-26508147)
chr3 (1-47)||(28917992-28918038)
chr3 (1-47)||(32429402-32429448)
chr3 (1-43)||(32804566-32804608)
chr3 (10-47)||(10690284-10690321)
chr3 (2-47)||(16192772-16192817)
chr3 (2-47)||(23870581-23870626)
chr3 (2-43)||(25074781-25074822)
chr3 (1-81)||(28678294-28678372)
chr3 (2-47)||(34910309-34910354)
chr3 (1-45)||(14829681-14829724)
chr3 (1-45)||(37077349-37077393)
[»] scaffold1528 (1 HSPs)
scaffold1528 (1-80)||(1026-1103)
[»] scaffold0036 (1 HSPs)
scaffold0036 (2-81)||(9737-9814)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-79)||(20163-20239)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-47)||(13391-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-47)||(21890-21936)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-47)||(51802-51848)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-47)||(53171-53217)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-45)||(26384-26428)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-74)||(135309-135378)
[»] scaffold0123 (1 HSPs)
scaffold0123 (10-80)||(44516-44584)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-44)||(192274-192317)
[»] scaffold0008 (1 HSPs)
scaffold0008 (11-81)||(263362-263430)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-87)||(241585-241669)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-47)||(46673-46719)
[»] scaffold0697 (1 HSPs)
scaffold0697 (2-43)||(1636-1677)
[»] scaffold0361 (1 HSPs)
scaffold0361 (2-47)||(14522-14567)
[»] scaffold0136 (1 HSPs)
scaffold0136 (7-87)||(3833-3911)
[»] scaffold0066 (1 HSPs)
scaffold0066 (2-47)||(33385-33430)
[»] scaffold0024 (1 HSPs)
scaffold0024 (12-88)||(68225-68299)
[»] scaffold0049 (1 HSPs)
scaffold0049 (11-47)||(63774-63810)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 3 - 513
Target Start/End: Original strand, 1747205 - 1747723
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaac--------attttatgtgtcagtgtcgtgttggtgtcgaacacatgggga 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||||    
T  1747205 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaattatacgttattatatgtgtcagtgtcgtgttggtgtcgaacacatgggga 1747304  T
Q  95 cacgcttaatctaaggagtgttgcaggtcaacctcttcaaggaagggaagtcatcgtagtcgtagctaacaactaggtcgtttttatggagagagtggtc 194  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  1747305 cacgcctaatctaaggagtgttgtaggtcaacctcttcaagggagggaagtcattgtagtcgtggctaacaactaggtcgtttttatggagagagtggtc 1747404  T
Q  195 aaagttggaacaagtgagaggggtaaacattgtaatcttaatctctttggacaaagctcgcaatccctttgcaggaaaagcggattggttggataggttg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  1747405 aaagttggaacaagtgagaggggtaaacattgtaatcttaatctctttggacaaagctcgcaatccctttgctggaaaagtggattggttggataggttg 1747504  T
Q  295 agcaatttgaggtgcaatcggaaagtggagattaggaggagaagccggttgaggtggttgaggttaccgcggaagcgtgtgaggttaaggcaggcgatgt 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1747505 agcaatttgaggtgcaatcggaaagtggagattaggaggagaagccggttgaggtggttgaggttaccgcggaagcgtgtgaggttaaggcaggcgatat 1747604  T
Q  395 tggggaaacgctggaagagacgtgggaagtaaggtagggtttggtttgagattgaaagagagaatttgtgacagttggttagggagagtaactgttttga 494  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1747605 tggggaaacgctggaagagacgtgggaggtaaggtagggtttggtttgagattgaaagagagaatttgtgacagttggttagggagagtaactgctttga 1747704  T
Q  495 gacgagggagagaaccttc 513  Q
    || ||||||||||||||||    
T  1747705 gatgagggagagaaccttc 1747723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 35723453 - 35723373
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaat-cacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcg 82  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| | ||  ||| |||||||||||||||| | |||||||    
T  35723453 tgacacgccgacaccgctaataatttgagaaaatacacataattcaatgta--attatatgtgtcagtgtcgtatcggtgtcg 35723373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40613441 - 40613487
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||    
T  40613441 tgacacgccgacaccgctaatattttgagaaaatcacataattcagt 40613487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 8423779 - 8423740
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  8423779 ccgacaccgctaataatttgagaaaatcacataattcagt 8423740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23293054 - 23293008
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23293054 tgacacgccgacacagctaataatttgaaaaaatcacataattcagt 23293008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36635315 - 36635361
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  36635315 tgacacgccaacaccactaataatttgagaaaatcacataattcagt 36635361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 7012058 - 7012103
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||    
T  7012058 gacacgccgacaccgataataatttgagaaaatgacataattcagt 7012103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 22234958 - 22234880
Alignment:
Q  2 gacacgccgacaccgctaataaattg-agaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||||||||||||||||| || ||| | |||||||||||||||||| ||  ||| |||||||| ||||||||| ||||||    
T  22234958 gacacgccgacaccgctaaaaatttgaaaaaaatcacataattcagtgta--attctatgtgtcggtgtcgtgtcggtgtc 22234880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 44132685 - 44132627
Alignment:
Q  28 agaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    |||||||||| ||||||||| |||  || |||||||| |||||||||||||||||||||||    
T  44132685 agaaaatcacgtaattcagtataa--ttatatgtgtcggtgtcgtgttggtgtcgaacaca 44132627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 38148785 - 38148716
Alignment:
Q  9 cgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 80  Q
    ||||||||||||||  ||||||||||||||||||||||| ||  ||||||  ||||  ||||||||||||||    
T  38148785 cgacaccgctaatagtttgagaaaatcacataattcagtgta--attttaaatgtcgatgtcgtgttggtgt 38148716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 903913 - 903959
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| ||| ||||| |||||| |||||||||||||||||||||||    
T  903913 tgacacaccggcaccgttaataatttgagaaaatcacataattcagt 903959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20743346 - 20743300
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| | |||||| |||||||||| ||||||||||||    
T  20743346 tgacacgccgacacggataataatttgagaaaatgacataattcagt 20743300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22440660 - 22440622
Alignment:
Q  9 cgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  22440660 cgacaccgttaataatttgagaaaatcacataattcagt 22440622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 23861492 - 23861455
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  23861492 ccgacaccgctaataaattgataaaatcacatgattca 23861455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24343499 - 24343544
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||| | |||||| |||||||||| ||||||||||||    
T  24343499 gacacgccgacacggataataatttgagaaaattacataattcagt 24343544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 30522973 - 30522932
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagtttaac 52  Q
    ||||||||||| | ||||||||||||||||||||||| ||||    
T  30522973 acaccgctaattatttgagaaaatcacataattcagtgtaac 30522932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 847942 - 847986
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||  |||||||||| |||||||||| ||||||||||    
T  847942 tgacacgccgatgccgctaataatttgagaaaattacataattca 847986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 16189710 - 16189746
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||| || |||||||||||||||||||||||    
T  16189710 acaccgctaaaaatttgagaaaatcacataattcagt 16189746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17345483 - 17345451
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  17345483 tgacacgccgacaccgctaataatttgagaaaa 17345451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20521917 - 20521873
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||    
T  20521917 tgacacgccgataccgataataatttgataaaatcacataattca 20521873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34200327 - 34200295
Alignment:
Q  13 accgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||| |||||||||||||||||||||    
T  34200327 accgctaataatttgagaaaatcacataattca 34200295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32308111 - 32308188
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||||||||||||| |||||    
T  32308111 tgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta--attgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19206043 - 19206119
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||  ||| |||||||| ||||| ||||||||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcacataattca--ttataattatatgtgtcggtgtcttgttggtgtc 19206119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6630980 - 6630895
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||| ||  ||| ||||||||  |||||||||||||||| |||||    
T  6630980 tgacacgccgacaccactaataatttgagaaagtcacttaattcagtgta--attatatgtgtcgatgtcgtgttggtgtcggacaca 6630895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 29787435 - 29787391
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcacataattcagt 29787391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 30731031 - 30731104
Alignment:
Q  4 cacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||    || |||||| ||||||||||||||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcacataattcagtgtaa----ttgtgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11722166 - 11722121
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcag 46  Q
    |||||||||||||||||||| || ||||||||||||||||||||||    
T  11722166 tgacacgccgacaccgctaacaatttgagaaaatcacataattcag 11722121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 5548673 - 5548738
Alignment:
Q  7 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    |||||||||||| |||| |||||||||||| |||||||||| ||  ||| ||||||||||||||||||    
T  5548673 gccgacaccgctgataatttgagaaaatcaaataattcagtgta--attatatgtgtcagtgtcgtgt 5548738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20549782 - 20549850
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||    
T  20549782 tgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgta--attatatgtgtcggtgtcg 20549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22868033 - 22868097
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagt 67  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||| ||  ||| |||||||||||    
T  22868033 tgacacgccgacaccactaataatatgagaaaatcacataattcagtgta--attatatgtgtcagt 22868097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24339633 - 24339717
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||| ||||||||| ||||||| ||||    
T  24339633 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcggtgtcgtgtcggtgtcggacac 24339717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22602778 - 22602707
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||||| ||  ||| |||||||| |||||||||    
T  22602778 tgacacgccgacaccgtaaattatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgt 22602707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 23191891 - 23191933
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  23191891 acgccgacaccgctaataatttgagaaaatcacatatttcagt 23191933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25481893 - 25481939
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  25481893 tgacacgccgacacagctaataatttgaaaaaatcacataattcagt 25481939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26733295 - 26733341
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  26733295 tgacacgtcgacaccgctaataatttgacaaaatcacataattcagt 26733341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27945032 - 27945078
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  27945032 tgacacgccgacaccactaataatttgagaaaattacataattcagt 27945078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28155563 - 28155604
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  28155563 acacgccgacaccgctaataatttgagaaaattacataattc 28155604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 24289813 - 24289857
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||    
T  24289813 acacgccgacaccgccaataatttgagaaaattacataattcagt 24289857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1433445 - 1433483
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacat 39  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  1433445 tgacacgccgacaccgttaataatttgagaaaatcacat 1433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2425801 - 2425759
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||| ||||| |||||| |||||||||||||||||||    
T  2425801 tgacacgccggcaccgttaataatttgagaaaatcacataatt 2425759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5307251 - 5307293
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  5307251 tgacacgccgacaccacttataatttgagaaaatcacataatt 5307293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 21828473 - 21828402
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    |||||||||||||||| || ||| |||||||||||||||||| || | ||  ||| ||||||||||||| ||||    
T  21828473 tgacacgccgacaccgttagtaatttgagaaaatcacataatccattgta--attgtatgtgtcagtgttgtgt 21828402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22484016 - 22484062
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| || |||||||  |||||||||||    
T  22484016 tgacacgccgacaccgctaataattttagaaaattgcataattcagt 22484062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 32287523 - 32287485
Alignment:
Q  9 cgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  32287523 cgacaccgctaataatctgagaaaatcacataattcagt 32287485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 23128728 - 23128646
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaaca 86  Q
    ||||||| ||||||  |||||| ||||||||| || |||||||||| |||  |  |||||||| |||| ||||||||||||||||    
T  23128728 gacacgctgacaccaataataatttgagaaaaccatataattcagtgtaa--tcatatgtgtcggtgttgtgttggtgtcgaaca 23128646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25791644 - 25791685
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataat 42  Q
    ||||||||||||||||||||| | |||||||| |||||||||    
T  25791644 tgacacgccgacaccgctaattatttgagaaattcacataat 25791685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 26329450 - 26329372
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||||||||||| || |||||| ||||||||| |||| |||||||| ||  ||| |||||||| | ||||||| ||||||    
T  26329450 tgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgta--attatatgtgtcggcgtcgtgtcggtgtc 26329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35297723 - 35297657
Alignment:
Q  18 taataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaaca 86  Q
    |||||| |||||||||||||||||||||  |||  ||| |||||||  ||||||||||| |||||||||    
T  35297723 taataatttgagaaaatcacataattca--ttataattatatgtgttggtgtcgtgttgatgtcgaaca 35297657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 2424619 - 2424651
Alignment:
Q  15 cgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||| |||||||||||||||||||||||    
T  2424619 cgctaataatttgagaaaatcacataattcagt 2424651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 24362269 - 24362192
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||  ||| ||||||||| |||||||| ||||||    
T  24362269 gacacgccgacaccgctaataatttgagagaatcacataattcagtgta--attatatgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 11927150 - 11927076
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||||||||| | |||||| |||| |||||||||||||||||| ||  ||| |||||||| ||||||||||||||||    
T  11927150 acgccgacactgttaataatttgataaaatcacataattcagtgta--attatatgtgtcggtgtcgtgttggtgtc 11927076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 34897077 - 34897122
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||    
T  34897077 gacacgtcgacaccgctaataatttgagaaaatcacataattcagt 34897122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 39954346 - 39954305
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatcacataatt 39954305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15816197 - 15816113
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||||||||||||  ||||||| |||| |||||||||||||| ||| ||  ||| || ||||| ||||||||||||||||| ||||    
T  15816197 tgacacgccgacacaactaataatttgaaaaaatcacataatttagtgta--attataagtgtcggtgtcgtgttggtgtcggacac 15816113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31109586 - 31109518
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    |||||||||||||||| |||||| |||||||||||| | |||||||| ||||  | |||||||||||||||    
T  31109586 tgacacgccgacaccgttaataatttgagaaaatcaaacaattcagtctaac--tatatgtgtcagtgtcg 31109518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 31236644 - 31236601
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  31236644 gacacgccgacactgctaataatttgagaaaatcacataattca 31236601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 13844663 - 13844596
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||| ||  ||| |||||||| ||||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatcacataattgagtgta--attatatgtgtcggtgtcg 13844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27101506 - 27101548
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  27101506 tgacacgccgacaccgctaataatttgaaaaaatcacataatt 27101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 18067993 - 18067956
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18067993 gacaccgctaataatttgagaaaatcacataattcagt 18067956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13437032 - 13436988
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    
T  13437032 tgacacgccgacacagctaataatttgaaaaaatcacataattca 13436988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22651967 - 22652011
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    
T  22651967 tgacacgccgacacagctaataatttgaaaaaatcacataattca 22652011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 4611532 - 4611571
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  4611532 ccgacaccgctaataatttgagaaaataacataattcagt 4611571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4786406 - 4786338
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    |||||||||||||||  |||||| || |||||||||||||||||||| ||  ||| |||||||| ||||||    
T  4786406 tgacacgccgacaccattaataatttaagaaaatcacataattcagtgta--attatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 11944658 - 11944734
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||||||||||| | |||||| |||| |||||||||||| ||||| ||  ||| |||||||| ||||||||||| ||||    
T  11944658 acacgccgacactgttaataatttgataaaatcacataactcagtgta--attatatgtgtcggtgtcgtgttgatgtc 11944734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 27213539 - 27213582
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||| |||||||| || ||||||||||||||||||    
T  27213539 gacacgccgacactgctaataatttcagaaaatcacataattca 27213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 7658458 - 7658500
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||    
T  7658458 acgccgacaccactaataatttgagaaaattacataattcagt 7658500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29510372 - 29510326
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||| ||||||||    
T  29510372 tgacacgccgacacagctaataatttgaaaaaatcacaaaattcagt 29510326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 3025557 - 3025610
Alignment:
Q  16 gctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    |||||||| ||||||||||||||||||||||| ||  ||| || ||||||||||||    
T  3025557 gctaataatttgagaaaatcacataattcagtgta--attataggtgtcagtgtcg 3025610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 25566841 - 25566910
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||| ||||||||||||||||    
T  25566841 gacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcggtgtcgtgttggtgtc 25566910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19040343 - 19040411
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||| ||||||    
T  19040343 tgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta--attatatgtgtctgtgtcg 19040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 10339194 - 10339109
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||| | | ||| |||||||||||| ||||| ||||||| ||||    
T  10339194 tgacacgccgacaccgcgattaatttgagaaaatcacataattcagtgtta-attatatgtgtcagtgccgtgtcggtgtcggacac 10339109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 26562681 - 26562764
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||| ||  ||| ||||||||  |||||||| ||||||||||||    
T  26562681 gacacgccgacactgctaaaaatttgagaaaatcacataattcagtgta--attatatgtgtcgatgtcgtgtcggtgtcgaacac 26562764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7265661 - 7265593
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||| ||||||    
T  7265661 tgacacgccaacaccgctaataatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9027169 - 9027240
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| || ||  ||| |||||||| |||||||||    
T  9027169 tgacacgccgacaccgctaataatttgagataatcacataattccgtgta--attatatgtgtcggtgtcgtgt 9027240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9658870 - 9658916
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  9658870 tgacacgccgacaccgctaataatttaagaaaatcacataattcagt 9658916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5000694 - 5000616
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||||| ||||||||||||||| | ||||||||||||| ||||||| ||  ||||||| |||||||||| ||| ||||||    
T  5000694 tgacacgtcgacaccgctaataattcgagaaaatcacatgattcagtata--attttatatgtcagtgtcatgtcggtgtc 5000616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9629374 - 9629418
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||    
T  9629374 tgacacgccgacaccgccaataatttgagaaaatcacataattca 9629418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16766688 - 16766773
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||| ||||||||| ||||||| |||||    
T  16766688 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcggtgtcgtgtcggtgtcggacaca 16766773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20371178 - 20371138
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataa 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  20371178 tgacacgccgacaccgctaataatttgagaaaatcacataa 20371138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17341732 - 17341686
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||    
T  17341732 tgacacgccgacaccgttaataatttgataaaatcacataattcagt 17341686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 9025553 - 9025491
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    ||||| |||||||| ||||||||||||||||||||||| ||  ||| |||||||| |||||||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgt 9025491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 10842524 - 10842565
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  10842524 gacacgccgacaccgctaataatttgaaaaaatcacataatt 10842565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5732578 - 5732539
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacata 40  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  5732578 tgacacgccgacaccgttaataatttgagaaaatcacata 5732539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 7377971 - 7378014
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||| ||||||||||||| || |||||||||||||||||||||    
T  7377971 gacaccccgacaccgctaaaaatttgagaaaatcacataattca 7378014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 8931668 - 8931592
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||||||||||| ||||| || |||||||||| |||||||||||| ||  ||| ||||||||  |||||||| ||||||    
T  8931668 acacgccgacacagctaaaaatttgagaaaataacataattcagtata--attatatgtgtcgatgtcgtgtcggtgtc 8931592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 10294098 - 10294182
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||| ||||| ||||||||||| |||||| |||| |||| |||| | |||  || |||||||| ||||||||||||||||| ||||    
T  10294098 tgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaa--ttatatgtgtcggtgtcgtgttggtgtcggacac 10294182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30866211 - 30866168
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||| || ||||||||||||| |||||||||||||||||||||    
T  30866211 gacacaccaacaccgctaataatttgagaaaatcacataattca 30866168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7977898 - 7977852
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  7977898 tgacacgccgacacagctaataatttgaaaaaattacataattcagt 7977852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7996446 - 7996400
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| |||||||| |||||||| |||||||||||| ||||||||||    
T  7996446 tgacatgccgacactgctaataatttgagaaaatcatataattcagt 7996400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8022355 - 8022401
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| |||||||| |||||||| |||||||||||| ||||||||||    
T  8022355 tgacatgccgacactgctaataatttgagaaaatcatataattcagt 8022401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 9107436 - 9107353
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    |||||||||||| |||||||| |||| ||||||||| |||||||| ||  |||  | ||||| ||||||||| ||||||| |||||    
T  9107436 acacgccgacacagctaataatttgaaaaaatcacaaaattcagtgta--attacaagtgtcggtgtcgtgtcggtgtcggacaca 9107353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12696315 - 12696361
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  12696315 tgacacgccgacacagctaataatttgaaaaaattacataattcagt 12696361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13851727 - 13851773
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||| ||||||||||||||| |||||||||| || |||||||||    
T  13851727 tgacacgtcgacaccgctaataatttgagaaaataacgtaattcagt 13851773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17841657 - 17841615
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  17841657 tgacacgccgacacagctaataatttgaaaaaatcacataatt 17841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19044455 - 19044501
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||| ||||||| |||||||||||||||    
T  19044455 tgacacgccgacacgactaataatttgagaatatcacataattcagt 19044501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33001357 - 33001315
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  33001357 tgacacgccgacactgctaataatttgaaaaaatcacataatt 33001315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34595125 - 34595171
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  34595125 tgacacgccgacacaactaataatttgaaaaaatcacataattcagt 34595171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 6665208 - 6665249
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcag 46  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  6665208 acgccgaaaccgctaataatttgagtaaatcacataattcag 6665249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 13360439 - 13360394
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| ||||||| ||| ||| |||||||||||||||||||||||    
T  13360439 gacacgtcgacaccactagtaatttgagaaaatcacataattcagt 13360394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 32511725 - 32511688
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| || ||||||||||||||||||||    
T  32511725 gacaccgctaataatttaagaaaatcacataattcagt 32511688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34073415 - 34073337
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||| ||| ||| ||||||||| ||||||||||| ||||||||||| ||  ||| |||| ||| ||||||||| ||||||    
T  34073415 tgacatgccaacatcgctaataatttgagaaaatctcataattcagtgta--attatatgggtcggtgtcgtgtcggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21424870 - 21424830
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataa 41  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  21424870 tgacacgccaacaccgctaataatttgaaaaaatcacataa 21424830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 25096415 - 25096455
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataat 42  Q
    |||||| ||||||| ||||||| ||||||||||||||||||    
T  25096415 gacacgacgacaccactaataatttgagaaaatcacataat 25096455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 31579283 - 31579247
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||| |||||||||||||||||||||||    
T  31579283 acaccgttaataatttgagaaaatcacataattcagt 31579247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 25361881 - 25361961
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||||||||| || |||| ||||||||||||||||||||||| ||  ||| |||||||||||||||||| ||||||| ||||    
T  25361881 acgccgacaccactgataatttgagaaaatcacataattcagtgta--attatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2896189 - 2896143
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2896189 tgacacgccgacaccgctaataatttgagaaaatcacataattcagt 2896143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10475045 - 10474999
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  10475045 tgacacgccgacaccgctaataacttgagaaaatcacataattcagt 10474999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36878452 - 36878498
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  36878452 tgacacgccgacaccgctaataatttgagaaaatcacataattcagt 36878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 9828036 - 9828106
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||| ||  |||||||||||| |||||||||    
T  9828036 gacacgccgacaccactaataatttgataaaatcacataattcagtgta--attttatgtgtcggtgtcgtgt 9828106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 34371714 - 34371783
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcg 82  Q
    |||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||| |||||||||||||||||    
T  34371714 gacaccgctaataa-ttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgttggtgtcg 34371783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 398833 - 398787
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  398833 tgacacgccgacaccgctaataatttgaaaaaatcacataattcagt 398787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7918279 - 7918208
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    |||||||| |||| | ||||||| ||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  7918279 tgacacgctgacatcactaataatttgagaaaatcacataattcagtgta--attatatgtgtcagtgtcgtgt 7918208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17831599 - 17831553
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  17831599 tgacacgccgacaccgctaataatttgagaaaatcacattattcagt 17831553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10572657 - 10572579
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| || ||  |||  ||||||| |||| |||||||||||    
T  10572657 tgacacgccgacaccactaataatttgagaaaatcacataattcggtgta--attaaatgtgtcggtgttgtgttggtgtc 10572579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 12443527 - 12443482
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||    
T  12443527 gacacgccgacacagctaataatttgagaaaatcacataattcagt 12443482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6427341 - 6427385
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||    
T  6427341 tgacacgccaacaccgctaataatttgagaaaatcacataattca 6427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17754302 - 17754379
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 80  Q
    |||||| |||||||||||||||| |||| ||||| |||||||||||| ||||  | ||||||||||||| |||| |||||    
T  17754302 tgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaac--tatatgtgtcagtgtggtgtcggtgt 17754379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 1262876 - 1262919
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  1262876 gacacgccgacacagctaataatttgagaaaatcacataattca 1262919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 113290 - 113336
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  113290 tgacacgccgacacagctaataatttgaaaaaatcacataattcagt 113336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6415069 - 6415019
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaa 51  Q
    ||||||||||||| ||||||| | |||||||||||||||||| ||||||||    
T  6415069 tgacacgccgacatcgctaattatttgagaaaatcacataatacagtttaa 6415019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34298427 - 34298473
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||    
T  34298427 tgacacaccgacaccactaataatttgagaaaatcacataattcagt 34298473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 44482234 - 44482305
Alignment:
Q  14 ccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||| |||| ||||||||||||||||||||||| ||  ||| |||||||| ||||||||| ||||||| ||||    
T  44482234 ccgcttataatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgtcggtgtcggacac 44482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 10233245 - 10233290
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||    
T  10233245 gacacaccaacaccactaataaattgagaaaatcacataattcagt 10233290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 25098622 - 25098577
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||| |||||||||||| |||| |||||||||||||||||||||||    
T  25098622 gacaagccgacaccgctgataatttgagaaaatcacataattcagt 25098577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 609526 - 609482
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||    
T  609526 tgacacgccgacaccactaataatttgagaaaattacataattca 609482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 5376566 - 5376522
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||    
T  5376566 acacgccgacaccgctaataatttaagaaaataacataattcagt 5376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9709811 - 9709854
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||    
T  9709811 tgacatgcctacaccgctaataatttgagaaaatcacataattc 9709854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 26238173 - 26238134
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  26238173 ccgacaccgctaataatttgagaaaataacataattcagt 26238134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 39953210 - 39953146
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||||||||||||| || |||||||||||||||| ||| ||  ||| |||||||| ||||||    
T  39953210 acgccgacaccgctaataattttagaaaatcacataatttagtgta--attgtatgtgtcggtgtcg 39953146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1486777 - 1486731
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||| ||||| |||||||| |||| ||||||||||||||||||    
T  1486777 tgacacgctgacacagctaataatttgaaaaaatcacataattcagt 1486731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 5898330 - 5898288
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||||||  ||| ||||||||||||||||||    
T  5898330 acgccgacaccgctaataatctgaaaaaatcacataattcagt 5898288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9103631 - 9103681
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaa 51  Q
    |||||||||||||| | |||||| |||| |||||||||||||| |||||||    
T  9103631 tgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaa 9103681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19562689 - 19562643
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| ||||||||||| |||| ||||||    
T  19562689 tgacacgccgacactgctaataatttgagaaaatctcatagttcagt 19562643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 20157410 - 20157372
Alignment:
Q  9 cgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  20157410 cgacaccgctaataatgtgagaaaatcacataattcagt 20157372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27471634 - 27471588
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||| ||||||||||| ||||||||| |||||||||||||    
T  27471634 tgacacaccgataccgctaataatttgagaaaagcacataattcagt 27471588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 29163448 - 29163381
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||||||||||||| || ||  ||||||||||||||||| ||||  ||| |||||||| ||||||    
T  29163448 gacacgccgacaccgctaaaaatttaggaaaatcacataattcaattta--attatatgtgtcggtgtcg 29163381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31015034 - 31015080
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||| |||| |||| |||||||| |||||||||||||||||||||||    
T  31015034 tgacgcgcctacacagctaataatttgagaaaatcacataattcagt 31015080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40285722 - 40285676
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| || ||||||||||||| ||||||||||| |||||||||||    
T  40285722 tgacacaccaacaccgctaataatttgagaaaatcgcataattcagt 40285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 41877534 - 41877496
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  41877534 acgccgacaccgctaataatttgagaaaattacataatt 41877496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9690340 - 9690303
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcaca 38  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  9690340 tgacacgctgacaccgctaataaactgagaaaatcaca 9690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21378570 - 21378615
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| ||||||| ||||||||||||| ||||| ||||||||||||    
T  21378570 gacacaccgacacagctaataaattgaaaaaattacataattcagt 21378615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 21530681 - 21530722
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||| |||||| |||||||||||| ||||||    
T  21530681 gacacgccgacaccgttaataatttgagaaaatcatataatt 21530722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36905988 - 36906033
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcag 46  Q
    |||||| || |||||||||||||  |||||||||||||||||||||    
T  36905988 tgacacaccaacaccgctaataatctgagaaaatcacataattcag 36906033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 40181871 - 40181908
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagt 40181908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 13436451 - 13436495
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||| |||||||| || || |||||||||||||||||    
T  13436451 acacgccgacactgctaataatttaaggaaatcacataattcagt 13436495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 19909298 - 19909334
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  19909298 acaccgctaataatttgagaaaatcacataactcagt 19909334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 34712449 - 34712380
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    |||| ||| ||| |||||||| |||||||||| |||||||| ||| |||  || ||||||||||||||||||    
T  34712449 acacaccgtcactgctaataatttgagaaaataacataatttagtgtaa--ttatatgtgtcagtgtcgtgt 34712380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38078729 - 38078685
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||| |||||| |||||||| |||| ||||||||||||||||    
T  38078729 tgacacgtcgacacagctaataatttgaaaaaatcacataattca 38078685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 38503313 - 38503357
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||| |||||||||||||||| |||||||||||| ||| ||||||    
T  38503313 acacaccgacaccgctaataatttgagaaaatcatatatttcagt 38503357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21616754 - 21616799
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  21616754 gacacgccgacaccgctaataatttgagaaaatcacataattcagt 21616799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 44860320 - 44860388
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 80  Q
    |||||||||||||| ||||||||||| ||||||||||| ||  ||| |||||||| |||||||||||||||    
T  44860320 gacaccgctaataatttgagaaaatcgcataattcagtgta--attatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21782886 - 21782840
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  21782886 tgacacgccgacactgctaataatttgagaaaatcacataattcagt 21782840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37411312 - 37411266
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  37411312 tgacatgccgacaccgctaataatttgagaaaatcacataattcagt 37411266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 18889651 - 18889575
Alignment:
Q  9 cgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    |||| |||||||||||||||||||||||||||||||||| ||  ||  |||||||| ||||| |||| |||||| ||||    
T  18889651 cgacgccgctaataaattgagaaaatcacataattcagtgta--atcatatgtgtcggtgtcttgtttgtgtcggacac 18889575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23718017 - 23718063
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||    
T  23718017 tgacacaccgacaccgctaataatttgagaaagtcacataattcagt 23718063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24105689 - 24105735
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||    
T  24105689 tgacacaccgacaccgctaataatttgagaaagtcacataattcagt 24105735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 28677904 - 28677946
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  28677904 acgccgacaccgctaataatttgaaaaaatcacataattcagt 28677946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31808068 - 31808134
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgt 69  Q
    |||||| |||||||||||||||| || | |||||||||||||||||| ||  ||| |||||||||||||    
T  31808068 tgacacaccgacaccgctaataatttaacaaaatcacataattcagtgta--attatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 18276518 - 18276558
Alignment:
Q  7 gccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  18276518 gccgacaccgctaataatttgagaaaatcacttaattcagt 18276558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18420502 - 18420458
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||    
T  18420502 tgacacgccaacactgctaataatttgagaaaatcacataattca 18420458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 31284041 - 31284080
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataat 42  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  31284041 acacgccgacactgctaataatttgagaaaatcacataat 31284080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 10535823 - 10535781
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||| |||||| |||||||||| ||||||||||||    
T  10535823 acgccgacaccgataataatttgagaaaatgacataattcagt 10535781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24894380 - 24894426
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| || | ||||||||||||||||||    
T  24894380 tgacacgccgacacagctaataatttaaaaaaatcacataattcagt 24894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30404918 - 30404872
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| | |||||| |||| ||||||||||||||||||    
T  30404918 tgacacgccgacacggttaataatttgaaaaaatcacataattcagt 30404872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 19573970 - 19574015
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||| |||||| || ||||||| ||||||||||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataacataattcagt 19574015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 36409689 - 36409619
Alignment:
Q  7 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||||||||||| |||| |||| |||||||||||||| ||| |||    ||||||||| ||||| ||||||||||    
T  36409689 gccgacaccgctgataatttgaaaaaatcacataatttagtgtaa----ttatgtgtcggtgtcatgttggtgtc 36409619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 42832343 - 42832298
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| |||||||||||||||| |||||||||| ||||| ||||||    
T  42832343 gacacaccgacaccgctaataatttgagaaaattacatatttcagt 42832298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 896202 - 896246
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||  |||||||||||||||| ||||    
T  896202 tgacacgccgacactgctaatagtttgagaaaatcacatatttca 896246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2331785 - 2331854
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    ||||||||  |||||  |||||| ||||||||||||||||||||||| ||    |||||||||| |||||||||    
T  2331785 tgacacgcaaacaccattaataatttgagaaaatcacataattcagtgta----tttatgtgtcggtgtcgtgt 2331854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 21374765 - 21374721
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||| |||||||| |||| ||||| ||||||||||||    
T  21374765 acacgccgacacagctaataatttgaaaaaattacataattcagt 21374721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36756412 - 36756327
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    ||||||| ||||||  ||||||| ||||  |||| |||||||||||| |||  || || ||||| |||||||||| ||||||||||||    
T  36756412 tgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaa--ttataagtgtcggtgtcgtgttagtgtcgaacaca 36756327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37558968 - 37559012
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||| |||  ||||||||||||||||    
T  37558968 tgacacgccgacacagctaataatttgtaaaaatcacataattca 37559012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3966494 - 3966579
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||| ||  ||| |||||||| |||||||||  |||||| |||||    
T  3966494 tgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgta--attatatgtgtcggtgtcgtgtcagtgtcggacaca 3966579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28588742 - 28588696
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  28588742 tgacacgccgacaccggtaataatttgagaaaatcacataattcagt 28588696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 27932229 - 27932272
Alignment:
Q  4 cacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  27932229 cacgccgacaccgctaataatttgagaaaattacataattcagt 27932272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 39698532 - 39698616
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    |||||||| ||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||||||||||||| ||||||| ||||    
T  39698532 tgacacgctgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcagtgtcgtgtcggtgtcggacac 39698616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27144454 - 27144496
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  27144454 tgacacgccgacaccgctaataatttgaggaaatcacataatt 27144496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17123039 - 17123080
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataat 42  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  17123039 tgacacgccaacaccgctaataatttgagaaaatcacataat 17123080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31084314 - 31084358
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    
T  31084314 tgacacgccgacacagctaataatttgaaaaaatcacataattca 31084358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2436913 - 2436956
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||||||||||||||||||||| |||  |||||||||||||||    
T  2436913 tgacacgccgacaccgctaataatttgcaaaaatcacataattc 2436956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 6035474 - 6035585
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacacatggggacacgct 100  Q
    ||||||||||||||||||||||| ||||| |||| | |||||||||| ||  ||| ||| |||| ||||||||| |||| |  ||||   |||||||||     
T  6035474 tgacacgccgacaccgctaataatttgag-aaataatataattcagtgta--attatatttgtcggtgtcgtgtcggtgacagacacgccgggacacgcc 6035570  T
Q  101 taatctaaggagtgt 115  Q
    |||||| ||||||||    
T  6035571 taatctgaggagtgt 6035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26716135 - 26716178
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||    
T  26716135 tgacatgccgacactgctaataatttgagaaaatcacataattc 26716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26985875 - 26985918
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||    
T  26985875 tgacatgccgacactgctaataatttgagaaaatcacataattc 26985918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6247613 - 6247659
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  6247613 tgacacgccgacacatctaataatttgaaaaaatcacataattcagt 6247659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6326365 - 6326319
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||| ||||| ||| |||||||||| ||||||||||||    
T  6326365 tgacacgccgacatcgctagtaatttgagaaaattacataattcagt 6326319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14674260 - 14674302
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  14674260 tgacacgccgacacagctaataatttgaaaaaatcacataatt 14674302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 19579696 - 19579734
Alignment:
Q  5 acgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  19579696 acgccgacacagctaataatttgagaaaatcacataatt 19579734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21191124 - 21191078
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  21191124 tgacatgccgacacagctaataatttgaaaaaatcacataattcagt 21191078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38816763 - 38816729
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38816763 tgacacgccgacaccgctaataatttgagaaaatc 38816729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 6471948 - 6471911
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  6471948 gacacggctaataatttgagaaaatcacataattcagt 6471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 9449463 - 9449504
Alignment:
Q  4 cacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||  |||||| |||||||||||||||||||||    
T  9449463 cacgccgacaccaataataatttgagaaaatcacataattca 9449504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 30502446 - 30502388
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||    
T  30502446 acaccgctaataatttgagaaaatcacttaattcagtgta--attatatgtgtcggtgtcg 30502388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 30542789 - 30542731
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||    
T  30542789 acaccgctaataatttgagaaaatcacttaattcagtgta--attatatgtgtcggtgtcg 30542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 32767004 - 32766930
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaa 84  Q
    |||||||||||||||| ||||||||||| || |||||| | ||  ||| |||||||  ||||||||| |||||||||    
T  32767004 ccgacaccgctaataatttgagaaaatcgcacaattcaatgta--attatatgtgtttgtgtcgtgtcggtgtcgaa 32766930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 34879342 - 34879387
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||| ||||||||| || |||||||||||| ||||||||||    
T  34879342 gacacgccggcaccgctaaaaatttgagaaaatcatataattcagt 34879387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 35017029 - 35017070
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    |||||||||| ||| ||||||| |||||||||||||||||||    
T  35017029 gacacgccgaaaccactaataatttgagaaaatcacataatt 35017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 36838544 - 36838606
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgtt 75  Q
    ||||||||||||| |||||||||| |||||||| ||| ||  ||| |||||||| ||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgta--attatatgtgtcggtgtcgtgtt 36838606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11685930 - 11685999
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgt 72  Q
    ||||| ||||||||||||||||| |||||||| || ||||||| ||| ||  ||| |||||||| |||||||    
T  11685930 tgacatgccgacaccgctaataatttgagaaagtcgcataatttagtgta--attatatgtgtcggtgtcgt 11685999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30098317 - 30098361
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||| ||| |||| |||||| |||||||||||||||||||||    
T  30098317 tgacacgacgaaaccgttaataatttgagaaaatcacataattca 30098361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 92798 - 92844
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  92798 tgacacgccgacaccgctaataatttgagaaaattacataattcagt 92844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8039903 - 8039824
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcg 82  Q
    ||||||||| ||||||||||||| |||||||||| | |||||||||| ||  ||| |||||||| ||||||||| |||||||    
T  8039903 tgacacgccaacaccgctaataatttgagaaaattatataattcagtgta--attatatgtgtcggtgtcgtgtcggtgtcg 8039824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8383248 - 8383294
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8383248 tgacacgccgacaccgctaataatttgagaaaatcatataattcagt 8383294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26290362 - 26290431
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgt 72  Q
    |||||||||||||||  |||||| |||||||||||||||| ||| |||||  ||| ||||||||||||||||    
T  26290362 tgacacgccgacaccattaataatttgagaaaatcacatagttcggttta--attatatgtgtcagtgtcgt 26290431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 5407314 - 5407271
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  5407314 gacacgccgacaccgctaaaaatttgagaaaatcacataattca 5407271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4987359 - 4987313
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  4987359 tgacacgccgacacagctaataatttgaaaaaatcacataattcagt 4987313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 49505221 - 49505154
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    ||||||| || ||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||    
T  49505221 gacacgcagagaccgctaataatttgagaaaatcacataatttagtgta--attatatgtgtcagtgtcg 49505154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 12703999 - 12704044
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||    
T  12703999 gacacgccgacaccactaataatttgagaaaagcacataattcagt 12704044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25064900 - 25064982
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    ||||||||||||||||||||| | |||| |||||||||||||| ||| |||    ||||||||  || |||||||||||||| ||||    
T  25064900 tgacacgccgacaccgctaatgatttgaaaaaatcacataatttagtgtaa----ttatgtgttggtatcgtgttggtgtcggacac 25064982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5441099 - 5441055
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||| ||||||||| || |||||||||||||||||||||    
T  5441099 tgacacgccgtcaccgctaaaaatttgagaaaatcacataattca 5441055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 7928448 - 7928509
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 71  Q
    |||||||||||||||| |||| |||||||||||||||||| ||  ||| |||||||| ||||||    
T  7928448 ccgacaccgctaataatttgaaaaaatcacataattcagtgta--attatatgtgtcggtgtcg 7928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 34307846 - 34307802
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||    
T  34307846 acacgctgacaccgctaataatttgagaaaatcacatatttcagt 34307802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40052323 - 40052367
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    
T  40052323 tgacacgccgacacagctaataatttgaaaaaatcacataattca 40052367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2620121 - 2620070
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaac 52  Q
    ||||||||||||||| ||||| | ||||||||||||||||||| ||| ||||    
T  2620121 tgacacgccgacaccactaatcatttgagaaaatcacataattaagtgtaac 2620070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9800031 - 9800074
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||    
T  9800031 tgacacgccgacacctctaataatttgagaaaattacataattc 9800074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 11313861 - 11313797
Alignment:
Q  8 ccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    ||||||| |||||||| ||||||||||||||||||| ||| ||  ||| ||||||| ||||||||||    
T  11313861 ccgacactgctaataatttgagaaaatcacataatttagtgta--attatatgtgttagtgtcgtgt 11313797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 14979175 - 14979218
Alignment:
Q  4 cacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||    
T  14979175 cacgccgacacagctaataatttgaaaaaatcacataattcagt 14979218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24633757 - 24633800
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||    
T  24633757 tgacatgccgacaccactaataatttgagaaaatcacataattc 24633800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1438795 - 1438841
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||| |||||| || |||||||||||||||||||||||    
T  1438795 tgacacaccgacatcgctaacaatttgagaaaatcacataattcagt 1438841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4991035 - 4990989
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||||||||||||  |||||||||| ||||||||||||    
T  4991035 tgacactccgacaccgctaatagtttgagaaaattacataattcagt 4990989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10954943 - 10954989
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  10954943 tgacacgccgacacaactaataatttgaaaaaatcacataattcagt 10954989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11493429 - 11493383
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||| ||||||| |||||||  ||||||||||||||||||||||    
T  11493429 tgacacgtcgacaccactaataatgtgagaaaatcacataattcagt 11493383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11610512 - 11610558
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||| ||||||||||||| || | ||||||||||||||||||    
T  11610512 tgacacgccaacaccgctaataatttaaaaaaatcacataattcagt 11610558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 14209105 - 14209188
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    |||||||||||||  ||||||| || | |||||||||||||||||| ||  |||  | ||||||||||||||| ||||||| ||||    
T  14209105 gacacgccgacacaactaataattttaaaaaatcacataattcagtgta--attacaagtgtcagtgtcgtgtcggtgtcggacac 14209188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21479109 - 21479155
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||| ||||||||    
T  21479109 tgacacgccgacacagctaataatttgaaaaaatcacacaattcagt 21479155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21720755 - 21720801
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||||| |||||| ||||||| ||| |||||||||||    
T  21720755 tgacacgccgacaccgataataatttgagaatatctcataattcagt 21720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26508101 - 26508147
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||| ||||| |||||||| |||| ||||||||||||||||||    
T  26508101 tgacacgctgacacagctaataatttgaaaaaatcacataattcagt 26508147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28917992 - 28918038
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||  |||||||| |||| ||||||||||||||||||    
T  28917992 tgacacgccgacatagctaataatttgaaaaaatcacataattcagt 28918038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32429448 - 32429402
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| |||||| ||||||||| || ||||||||||||||||||||    
T  32429448 tgacactccgacaacgctaataatttaagaaaatcacataattcagt 32429402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32804608 - 32804566
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||| |||||||||| |||||| |||||||||||||||||||    
T  32804608 tgacatgccgacaccgttaataatttgagaaaatcacataatt 32804566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 10690321 - 10690284
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  10690321 gacaccgctaataatctgagaaaatcacataattcagt 10690284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 16192817 - 16192772
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||| ||||||||| |||||| |||||||||| ||||||||||||    
T  16192817 gacacaccgacaccgttaataatttgagaaaataacataattcagt 16192772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 23870626 - 23870581
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||    
T  23870626 gacacgtcgacaccgctaataatttgaaaaaatcatataattcagt 23870581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 25074781 - 25074822
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||| |||||| |||||||||| ||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataatt 25074822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28678294 - 28678372
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    ||||| |||||| | |||||||| || | |||||||||||||| ||| |||  || |||||||| ||||||||||||||||    
T  28678294 tgacatgccgacgctgctaataatttaataaaatcacataatttagtataa--ttgtatgtgtcggtgtcgtgttggtgtc 28678372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 34910309 - 34910354
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||  ||||||| |||| ||||||||||||||||||    
T  34910309 gacacgccgacacaactaataatttgaaaaaatcacataattcagt 34910354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14829681 - 14829724
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    
T  14829681 tgacacgccgacacagctaataatttga-aaaatcacataattca 14829724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37077349 - 37077393
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    |||||||||||||||| |||||| ||||||| || ||||||||||    
T  37077349 tgacacgccgacaccgataataatttgagaatataacataattca 37077393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1026 - 1103
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 80  Q
    |||||| |||||||||||||||| |||| ||||| |||||||||||| ||||  | ||||||||||||| |||| |||||    
T  1026 tgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaac--tatatgtgtcagtgtggtgtcggtgt 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 9814 - 9737
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||| |||||| || ||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||||||||||||    
T  9814 gacatgccgacgccactaataatttgagaaaatcacttaattcagtgta--attatatgtgtcggtgtcgtgttggtgtc 9737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 20163 - 20239
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtg 79  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||||||||||||| ||||    
T  20163 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcagtgtcgtgtcggtg 20239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13391 - 13437
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  13391 tgacacgccgacacaactaataatttgagaaaatcacataattcagt 13437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21936 - 21890
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  21936 tgacacgccgacacaactaataatttgagaaaatcacataattcagt 21890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51802 - 51848
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  51802 tgacacgccgacacagctaataatttgaaaaaatcacataattcagt 51848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53171 - 53217
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  53171 tgacacgccgataccgccaataatttgagaaaatcacataattcagt 53217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26384 - 26428
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattca 45  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||    
T  26384 tgacacgtcgacaccactaataatttgagaaaatcacataattca 26428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 135378 - 135309
Alignment:
Q  3 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 74  Q
    |||| ||||||| |||||||| |||||||||||||||||||| || ||  ||| |||||||| |||||||||    
T  135378 acacaccgacactgctaataatttgagaaaatcacataattctgtgta--attatatgtgtcggtgtcgtgt 135309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 44584 - 44516
Alignment:
Q  10 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 80  Q
    ||||||||||| || ||||||||||||||||||||||| ||  ||| |||||||| || |||||| |||||    
T  44584 gacaccgctaaaaatttgagaaaatcacataattcagtgta--attatatgtgtcggtatcgtgtcggtgt 44516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 192317 - 192274
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattc 44  Q
    |||||||||||||||| |||||| |||||||||| |||||||||    
T  192317 tgacacgccgacaccgttaataatttgagaaaattacataattc 192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 263430 - 263362
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 81  Q
    |||| |||||||| ||||||||| ||||||||||||| ||  ||| || ||||||||||||||| ||||||    
T  263430 acactgctaataatttgagaaaaccacataattcagtgta--attataagtgtcagtgtcgtgtcggtgtc 263362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 241585 - 241669
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    |||||||||||||| |||||||| |||  |||||||||||||| ||| ||  ||| |  ||||| ||||||||||||||||| ||||    
T  241585 tgacacgccgacacagctaataatttggaaaaatcacataatttagtgta--attatgagtgtcggtgtcgtgttggtgtcggacac 241669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46673 - 46719
Alignment:
Q  1 tgacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||| | |||||| |||| ||||||||||||||||||    
T  46673 tgacacgccgacacagttaataatttgaaaaaatcacataattcagt 46719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 1636 - 1677
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataatt 43  Q
    ||||||||||||||| |||||| |||||||||||| ||||||    
T  1636 gacacgccgacaccgttaataatttgagaaaatcatataatt 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 14522 - 14567
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    |||||||||||||  ||||||| |||| ||||||||||||||||||    
T  14522 gacacgccgacacaactaataatttgaaaaaatcacataattcagt 14567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 3911 - 3833
Alignment:
Q  7 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 87  Q
    |||||||| | |||||| || | |||||||||||||||||| |||  ||  | ||||||||||||||||||||||| ||||    
T  3911 gccgacacggttaataatttaaaaaaatcacataattcagtgtaa--ttacaagtgtcagtgtcgtgttggtgtcggacac 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 33430 - 33385
Alignment:
Q  2 gacacgccgacaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  33430 gacacgccgacacagctaataatttgaaaaaataacataattcagt 33385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 68299 - 68225
Alignment:
Q  12 caccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 88  Q
    ||||| |||||| |||||||||||| |||||| ||| |||  || || ||||||||||||| | |||||||||||||    
T  68299 caccgttaataatttgagaaaatcatataatttagtataa--ttataggtgtcagtgtcgtatcggtgtcgaacaca 68225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 63774 - 63810
Alignment:
Q  11 acaccgctaataaattgagaaaatcacataattcagt 47  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  63774 acaccgctaataatttgagaaaattacataattcagt 63810  T

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