View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5843-Insertion-3 (Length: 349)
Name: NF5843-Insertion-3
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5843-Insertion-3 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 85 - 349
Target Start/End: Original strand, 34233462 - 34233724
Alignment:
| Q |
85 |
gaccacatgataatataattagtcaaaattgcaaatgaggattggtagtgatgcttgaaatgagcatattttatctcaacttaagaatattctctctttt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233462 |
gaccacatgataatataattagtcaaaattgcaaatgaggattggtagtgatgcttgaaatgagcatattttatctcaacttaagaatattctctctttt |
34233561 |
T |
|
| Q |
185 |
acttagtcattagcttaggcttatttgtaggcacaattgctttccacatctacttatttgcattcctcattataaggcatgatttttccggttctaatta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34233562 |
acttagtcattagcttaggcttatttgtaggcacaattgctttccacatctacttatttgcattcctcattataaggcatgatttttccggttctaatca |
34233661 |
T |
|
| Q |
285 |
ataaattcattagcctatgtctatatattgagtttgtgggttacatctccctgatatttttgtga |
349 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34233662 |
ataaattcattagcctatgtc--tatattgagtttgtgggttacatctccctcatatttttgtga |
34233724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 34235159 - 34235306
Alignment:
| Q |
85 |
gaccacatgataatataattagtcaaaattgcaaatgaggattggtagtgatgcttgaaatgagcatattttatctcaacttaagaatattctctctttt |
184 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34235159 |
gaccacatgttaatatacttagtcaaaattgcaaatgagggttggtaatgatgcttgaaatgagcctattttatctcaacttaagaatattctctctttt |
34235258 |
T |
|
| Q |
185 |
acttagtcattagcttaggcttatttgtaggcacaattgctttccaca |
232 |
Q |
| |
|
||| |||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
34235259 |
actcagtcattagctttggctcatttgtaggcacaattgctttccaca |
34235306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University