View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5843_high_1 (Length: 652)
Name: NF5843_high_1
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5843_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Complemental strand, 42899659 - 42899010
Alignment:
| Q |
1 |
cagagagtggtttaagacctaagaaatctcttgtaaatgcattgtttcct---------acatcgtcatcattggtggttgtttttgtaatatcattatc |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
42899659 |
cagagagtggtttaagacctaagaaatctcttgtaaatgcattgtttcctccagcggcaacatcgtcatcattggtggttgtttttggaatatcattatc |
42899560 |
T |
|
| Q |
92 |
accatcatgattgctattatgatcttgatttgaatgaagaatatttccagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagag |
191 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899559 |
accatcatgattgatattatgatcttgatttgaatgaagaatatttccagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagag |
42899460 |
T |
|
| Q |
192 |
ttgtttatcatttggtcttcacatgaggacaaattcaaactaaaattaccatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgac |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899459 |
ttgtttatcatttggtcttcacatgaggacaaattcaaactaaaattaccatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgac |
42899360 |
T |
|
| Q |
292 |
cctgttggtgggtcccactcatcatggactgtgatgagcatgagctggttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgagg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899359 |
cctgttggtgggtcccactcatcatggactgtgatgagcatgagctggttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgagg |
42899260 |
T |
|
| Q |
392 |
tgaagctgcagatgatggttggtaggatggaagtgtaggagtaggaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaa |
491 |
Q |
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| T |
42899259 |
tgaagctgcagatgatggttggtaggatggaagtgtagaagtaggaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaa |
42899160 |
T |
|
| Q |
492 |
tagtttgaagagagatcaatggatgattgacaaagccaagagggtatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttca |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899159 |
tagtttgaagagagatcaatggatgattgacaaagccaagagggtatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttca |
42899060 |
T |
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| Q |
592 |
atgtgaagccttggatatcttgtgtttggagattgttcatgttgtgatga |
641 |
Q |
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| T |
42899059 |
atgtgaagccttggatatcttgagtttggagattgttcatgttgtgatga |
42899010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 5787617 - 5787666
Alignment:
| Q |
339 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtg |
388 |
Q |
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| T |
5787617 |
gttgcacccatttgagctgctttctgcaacaatgcagtagctgacatgtg |
5787666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 402
Target Start/End: Complemental strand, 36990900 - 36990837
Alignment:
| Q |
339 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcag |
402 |
Q |
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||||||||||| ||||| ||||| |||| |||||| || ||||||||||||||||||| ||||| |
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| T |
36990900 |
gttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgaggtgaagttgcag |
36990837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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