View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5843_high_2 (Length: 352)
Name: NF5843_high_2
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5843_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 34233717 - 34233462
Alignment:
| Q |
1 |
aatatcagggagatgtaacccacaaactcaatatatagacataggctaatgaatttattaattagaaccggaaaaatcatgccttataatgaggaatgca |
100 |
Q |
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| T |
34233717 |
aatatgagggagatgtaacccacaaactcaatata--gacataggctaatgaatttattgattagaaccggaaaaatcatgccttataatgaggaatgca |
34233620 |
T |
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| Q |
101 |
aataagtagatgtggaaagcaattgtgcctacaaataagcctaagctaatgactaagtaaaagagagaatattcttaagttgagataaaatatgctcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34233619 |
aataagtagatgtggaaagcaattgtgcctacaaataagcctaagctaatgactaagtaaaagagagaatattcttaagttgagataaaatatgctcatt |
34233520 |
T |
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| Q |
201 |
tcaagcatcactaccaatcctcatttgcaattttgactaattatattatcatgtggtc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34233519 |
tcaagcatcactaccaatcctcatttgcaattttgactaattatattatcatgtggtc |
34233462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 111 - 258
Target Start/End: Complemental strand, 34235306 - 34235159
Alignment:
| Q |
111 |
tgtggaaagcaattgtgcctacaaataagcctaagctaatgactaagtaaaagagagaatattcttaagttgagataaaatatgctcatttcaagcatca |
210 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34235306 |
tgtggaaagcaattgtgcctacaaatgagccaaagctaatgactgagtaaaagagagaatattcttaagttgagataaaataggctcatttcaagcatca |
34235207 |
T |
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| Q |
211 |
ctaccaatcctcatttgcaattttgactaattatattatcatgtggtc |
258 |
Q |
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|||||| |||||||||||||||||||||| ||||||| ||||||||| |
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| T |
34235206 |
ttaccaaccctcatttgcaattttgactaagtatattaacatgtggtc |
34235159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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