View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5844-Insertion-4 (Length: 345)
Name: NF5844-Insertion-4
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5844-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 54885849 - 54885514
Alignment:
| Q |
9 |
attcccaccatgaaggaacgagatcatgtatggtattatggaaacagatcatgtatttagctaatcttaaagtcacttttaaactcaatgtaaggatgaa |
108 |
Q |
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| T |
54885849 |
attcccaccatgaaggaacgagatcatgtatggtattatggaaacagatcatgtatttagctaatcttaaagtcacttttaaactcaatgtaaggatgaa |
54885750 |
T |
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| Q |
109 |
gcattattagaaagtttaaacaagaattttttatcgagccgtgttaactaattgtggtaaaaatgcttctttccaatattcaaagtttaaggtagaagta |
208 |
Q |
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| T |
54885749 |
acattattagaaagtttaaacaagaattttttatcgagccgtgttaactaattgtggtaaaaatgcttctttccaatattcaaagtttaaggtagaagta |
54885650 |
T |
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| Q |
209 |
gaatagcaaggttgttggtggtgctgtgctgagttacttgtggccaagtcccacatcgttggatggaaacaacagacaccagagacttaagtataaataa |
308 |
Q |
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| T |
54885649 |
gaatagcaaggttgttggtggtgctgtgctgagttacttgtggccaagtcccacatcgttggatggaaacaacagacaccagagacttaagtataaataa |
54885550 |
T |
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| Q |
309 |
agtgctttgaacaacgactattacatagcgttctca |
344 |
Q |
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| T |
54885549 |
agtgctttgaacaacgaccattacatagcgttctca |
54885514 |
T |
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