View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5844-Insertion-5 (Length: 290)

Name: NF5844-Insertion-5
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5844-Insertion-5
NF5844-Insertion-5
[»] chr3 (1 HSPs)
chr3 (7-290)||(195246-195529)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 195529 - 195246
Alignment:
Q  7 cagctgggccatgtgaactctattctttaatttggtgagttgggagatggaaagataaaagtaacaaatcatgtattgttgatcattaagctagttactg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  195529 cagctgggccatgtgaactctattctttaatttggtgagttgggagatggaaagataaaagtaacaaatcatgtattgttgatcattaagctagttactg 195430  T
Q  107 aatttgagctatttcaactaatattttgtggagagattgtggtttggagaagaatggacaatgatcactgcctttgattttgaaaactccttcaggtgga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  195429 aatttgagctatttcaactaatattttgtggagagattgtggtttggagaagaatggacaatgatcactgcctttgattttgaaaactccttcaggtgga 195330  T
Q  207 ttttcccccacaagcttctcttggacatctggtgaaagagcacgatcatctagcgtttgaatgtaaaaacggcgagcagtacca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  195329 ttttcccccacaagcttctcttggacatctggtgaaagagcacgatcatctagcgtttgaatgtaaaaacggcgagcagtacca 195246  T

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