View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5844-Insertion-7 (Length: 119)

Name: NF5844-Insertion-7
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5844-Insertion-7
NF5844-Insertion-7
[»] chr5 (2 HSPs)
chr5 (9-119)||(454561-454671)
chr5 (9-115)||(470086-470192)
[»] scaffold0007 (1 HSPs)
scaffold0007 (39-109)||(7122-7192)
[»] chr6 (9 HSPs)
chr6 (39-109)||(20236134-20236204)
chr6 (39-109)||(22130118-22130188)
chr6 (39-109)||(18995812-18995882)
chr6 (8-78)||(22206832-22206902)
chr6 (9-78)||(20233232-20233301)
chr6 (9-78)||(22127216-22127285)
chr6 (39-78)||(18991089-18991128)
chr6 (8-115)||(21968276-21968383)
chr6 (39-78)||(24386937-24386976)
[»] chr1 (3 HSPs)
chr1 (9-64)||(47698389-47698444)
chr1 (9-78)||(47607319-47607388)
chr1 (9-69)||(47574620-47574680)
[»] scaffold0074 (1 HSPs)
scaffold0074 (39-78)||(49608-49647)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 2e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 454561 - 454671
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454561 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctc 454660  T
Q  109 gtgcaatacca 119  Q
    |||||||||||    
T  454661 gtgcaatacca 454671  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 470086 - 470192
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctc 108  Q
    |||||||||||||| || | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||| |||| ||||    
T  470086 atttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtatgactttaagtcttgaatactcatgtaagtaaagaattcctc 470185  T
Q  109 gtgcaat 115  Q
    |||||||    
T  470186 gtgcaat 470192  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 7192 - 7122
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 109  Q
    |||||||||||||||||||| |||||||| ||||| |||| ||| |||||||| || ||| ||||||||||    
T  7192 atattgctaggtttgagatcccgatgtataactttgagtcgtgaatgatcatgcaaataaagaatccctcg 7122  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 20236134 - 20236204
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 109  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  20236134 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 20236204  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 22130118 - 22130188
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 109  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  22130118 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 22130188  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 18995812 - 18995882
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 109  Q
    |||||||||||||||||||| |||||||| ||||| ||||  || || ||||| || ||| ||||||||||    
T  18995812 atattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaagaatccctcg 18995882  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 22206902 - 22206832
Alignment:
Q  8 aatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    |||||| ||| ||||||| | |||||| |  |||||||||||||||||||| |||||||| ||||| ||||    
T  22206902 aattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactttgagtc 22206832  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 20233301 - 20233232
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    ||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  20233301 atttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 20233232  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 22127285 - 22127216
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    ||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  22127285 atttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 22127216  T

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Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 18991089 - 18991128
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    |||||||||||||||||||| |||||||| ||||| ||||    
T  18991089 atattgctaggtttgagatcccgatgtataactttgagtc 18991128  T

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Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 21968276 - 21968383
Alignment:
Q  8 aatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccct 107  Q
    |||||| ||| ||||||| | |||||| |  ||||| |||||||||||||| |||||||| ||||| ||||  || || ||||| || ||| |||| |||    
T  21968276 aattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaataaagaattcct 21968375  T
Q  108 cgtgcaat 115  Q
    || |||||    
T  21968376 cgagcaat 21968383  T

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Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 24386976 - 24386937
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    |||||||||||||||||||  |||||||| ||||||||||    
T  24386976 atattgctaggtttgagattccgatgtataactttaagtc 24386937  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 47698444 - 47698389
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 64  Q
    ||||| |||||||| || | ||||||||||| ||| ||||||||||||||||||||    
T  47698444 attttaggattcatgttatcatctaacaatacattactaggtttgagatcacgatg 47698389  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 47607388 - 47607319
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    ||||| ||||||||||  | |||||| || ||||| |||||||| |||||||||||||| ||||| ||||    
T  47607388 attttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtc 47607319  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 47574680 - 47574620
Alignment:
Q  9 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 69  Q
    |||||||||||||||||   ||||||||  | || ||||||||| ||||||||||||||||    
T  47574680 atttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatga 47574620  T

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Target: scaffold0074 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 49647 - 49608
Alignment:
Q  39 atattgctaggtttgagatcacgatgtatgactttaagtc 78  Q
    |||||||||||||||||||| |||||||| ||||| ||||    
T  49647 atattgctaggtttgagatcccgatgtataactttgagtc 49608  T

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