View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5844_high_1 (Length: 503)
Name: NF5844_high_1
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5844_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Original strand, 10912646 - 10913117
Alignment:
| Q |
13 |
tgaaaggttgatttttatgttttcagaactcttcattggattgcttgaaagctctgatgttgtaagagttgaggtatcttggaatagagactcattataa |
112 |
Q |
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| T |
10912646 |
tgaaaggttgatttttatgttttcagaactcttcattggattgctttaaagatctgatgttgtaagagttgaggtatcttggaatagagactcattataa |
10912745 |
T |
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| Q |
113 |
tcacttttaggaagtgctttgcaattgttgctgtctttgtttctttgtatagtttacattgaaagtttgagtttttctttaaatcttcattttaaaaaat |
212 |
Q |
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| T |
10912746 |
tcacttttaggaagtgctttgcaattgttgctgtctttgtttctttgtatagtttacattgaaagtttgagtttttctttaaaccttcattttaaaaaat |
10912845 |
T |
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| Q |
213 |
aattcaaaggccaaactagaaatagaaaaagagaagagatatacaatgctaatacattgtttgaaactgaaatcaagtccacctttgaattaacaaagta |
312 |
Q |
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| T |
10912846 |
aattcaaaggccaaactagaaatagaaaaagagaagagttatccaatgctaatacattgtttgaaactgaaatcaagtccacctttgaattaacaaagta |
10912945 |
T |
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| Q |
313 |
aaaggcctacaccacaaaagttaatttttaggtttcgacttacaagttacaacgagtcaacgacatttttcttttaaatagtttcctaaggct---ccct |
409 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10912946 |
aaaggc-----cgacaaaagttaatttttaggtttcgacttacaagttacaacgagtcaacgacatttttcttttaaatagtttcctaaggctagggact |
10913040 |
T |
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| Q |
410 |
attatccttgcttggctgagagtattagtagcagtatctgcagaaaagttaacgtcgttgtattatgaagcagtaca |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10913041 |
attatccttgcttggctgagagtattagtagcagtatctgcagaaaagttaacgtcattgtattatgaagcagtaca |
10913117 |
T |
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