View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5844_low_2 (Length: 346)
Name: NF5844_low_2
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5844_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 54885520 - 54885849
Alignment:
| Q |
1 |
cgctatgtaatagtcgttgttcaaagcactttatttatacttaagtctctggtgtctgttgtttccatccaacgatgtgggacttggccacaagtaactc |
100 |
Q |
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| T |
54885520 |
cgctatgtaatggtcgttgttcaaagcactttatttatacttaagtctctggtgtctgttgtttccatccaacgatgtgggacttggccacaagtaactc |
54885619 |
T |
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| Q |
101 |
agcacagcaccaccaacaaccttgctattctacttctaccttaaactttgaatattggaaagaagcatttttaccacaattagttaacacggctcgataa |
200 |
Q |
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| T |
54885620 |
agcacagcaccaccaacaaccttgctattctacttctaccttaaactttgaatattggaaagaagcatttttaccacaattagttaacacggctcgataa |
54885719 |
T |
|
| Q |
201 |
aaaattcttgtttaaactttctaataatgcttcatccttacattgagtttaaaagtgactttaagattagctaaatacatgatctgtttccataatacca |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54885720 |
aaaattcttgtttaaactttctaataatgtttcatccttacattgagtttaaaagtgactttaagattagctaaatacatgatctgtttccataatacca |
54885819 |
T |
|
| Q |
301 |
tacatgatctcgttccttcatggtgggaat |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
54885820 |
tacatgatctcgttccttcatggtgggaat |
54885849 |
T |
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