View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5844_low_3 (Length: 339)
Name: NF5844_low_3
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5844_low_3 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 46 - 339
Target Start/End: Original strand, 30070917 - 30071210
Alignment:
| Q |
46 |
tattagattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaata |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
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| T |
30070917 |
tattagattctctactacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaata |
30071016 |
T |
|
| Q |
146 |
ggaccagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30071017 |
ggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatagtcagaaaaaactatccctt |
30071116 |
T |
|
| Q |
246 |
tggaaccatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30071117 |
tggaaccatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgcagcttttga |
30071210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 46 - 339
Target Start/End: Original strand, 30045087 - 30045380
Alignment:
| Q |
46 |
tattagattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaata |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
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| T |
30045087 |
tattagattctctacaacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaata |
30045186 |
T |
|
| Q |
146 |
ggaccagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||| | ||||||| |
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| T |
30045187 |
ggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctt |
30045286 |
T |
|
| Q |
246 |
tggaaccatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
30045287 |
tggaaccataagacatgagctcagatccttgaatctttggtcggcttgcgaaaacgatgtcgtgggttttgaggaatgattctgctgcttttga |
30045380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 50 - 339
Target Start/End: Complemental strand, 30006063 - 30005774
Alignment:
| Q |
50 |
agattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggac |
149 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||| || |||||||||| |
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|
| T |
30006063 |
agattctctacaacctcactaacattcacaacctcaccctccaaggcagctttctccaaagatataaccaaaacatccaacttctccttcctaataggac |
30005964 |
T |
|
| Q |
150 |
cagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttgga |
249 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
30005963 |
caaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttgga |
30005864 |
T |
|
| Q |
250 |
accatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||||| ||||||| || ||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
30005863 |
accataagacatgagatctgatccttgaacctttggtcgacttgcaaaaacgatgtcatgagttttgaggaatgattctgcagcttttga |
30005774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 50 - 339
Target Start/End: Complemental strand, 29999625 - 29999336
Alignment:
| Q |
50 |
agattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggac |
149 |
Q |
| |
|
|||||||| || | |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29999625 |
agattctcgacaatctcactaacattcacaacctcacctaccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggac |
29999526 |
T |
|
| Q |
150 |
cagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttgga |
249 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| ||||||||| | |||||| || |
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| T |
29999525 |
ccgacttctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttaga |
29999426 |
T |
|
| Q |
250 |
accatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
29999425 |
accataggacatgagctctgatccttgaatcttcggtcggcttgcgaaaacgatgtcatgggttttgaggaatgattctgctccttttga |
29999336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 50 - 339
Target Start/End: Complemental strand, 29963316 - 29963027
Alignment:
| Q |
50 |
agattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggac |
149 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||| || ||||||| || || |||||||||||| |||||||| || |||||||||| |
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|
| T |
29963316 |
agattctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggac |
29963217 |
T |
|
| Q |
150 |
cagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttgga |
249 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||| ||||||||| | | ||||||||| |
|
|
| T |
29963216 |
caaacatctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttgga |
29963117 |
T |
|
| Q |
250 |
accatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||||| || ||||||| |||| ||||| ||||||| || ||||||||| ||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
29963116 |
accataaaaaatgagctgagatgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgcagcttttga |
29963027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 50 - 339
Target Start/End: Original strand, 30011482 - 30011771
Alignment:
| Q |
50 |
agattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggac |
149 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||| || ||||||| || || |||||||||||| |||||||| || |||||||||| |
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| T |
30011482 |
agattctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggac |
30011581 |
T |
|
| Q |
150 |
cagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttgga |
249 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||| ||||||||| | | ||||||||| |
|
|
| T |
30011582 |
caaacatctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttgga |
30011681 |
T |
|
| Q |
250 |
accatataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||||| || ||||||| |||| ||||| ||||||| || ||||||||| ||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
30011682 |
accataaaaaatgagctgagatgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgcagcttttga |
30011771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 29952211 - 29952005
Alignment:
| Q |
50 |
agattctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggac |
149 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||| ||||| || || ||||||| || |
|
|
| T |
29952211 |
agattctctacaacctcactaacattcacaacctcactcaccaaagcagctttctccaatgacttaatcaaaacatccaacttttccttcctaatagaac |
29952112 |
T |
|
| Q |
150 |
cagacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttgga |
249 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| | ||||||| | | ||||||||| |
|
|
| T |
29952111 |
caaacatctcaacttttgaagcactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttgga |
29952012 |
T |
|
| Q |
250 |
accatat |
256 |
Q |
| |
|
||||||| |
|
|
| T |
29952011 |
accatat |
29952005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 52 - 339
Target Start/End: Complemental strand, 29990919 - 29990632
Alignment:
| Q |
52 |
attctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggacca |
151 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||| ||||||| |||||| | ||||| |||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
29990919 |
attctctacaatctcactgacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggaccc |
29990820 |
T |
|
| Q |
152 |
gacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttggaac |
251 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| | || | |||||| | | ||||||| ||| |
|
|
| T |
29990819 |
gacttctcaacttttgaagcactaagaagtttcaaagtgcagagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaac |
29990720 |
T |
|
| Q |
252 |
catataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||| | |||| ||| | |||| | || |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29990719 |
cataagatatgatctctgctcctataagtttcggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttga |
29990632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 52 - 339
Target Start/End: Complemental strand, 29944088 - 29943801
Alignment:
| Q |
52 |
attctctactacctcactaacattcacaacctcaccaaccaaagcagctttctccaaagatttaaccaaaacactcaactcctcttttctaataggacca |
151 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||| |
|
|
| T |
29944088 |
attctctacagcctcactaacattcacaacctcaccctccagagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggacca |
29943989 |
T |
|
| Q |
152 |
gacatctcaacttttgaagcactaagaagtttcaaagtgctaactttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttggaac |
251 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| | || ||| ||||||||||||||||||| | || | |||||| | | ||||||| ||| |
|
|
| T |
29943988 |
aacatctcaactttcgaagcactaagaagttttgaagtacaaagttttctcacactacgccaataagagtcgtacttagaaaacgccaaccctttgcaac |
29943889 |
T |
|
| Q |
252 |
catataacatgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
|||| |||||| || | |||| | | |||||| |||| |||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
29943888 |
cataagacatgatctgtgctcctacaagttccggtcggtttgcgaaaacgatgtcatgggttttgacgaatgactctgcggcttttga |
29943801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 29949548 - 29949469
Alignment:
| Q |
260 |
atgagctcagatccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgctgcttttga |
339 |
Q |
| |
|
||||| |||| ||||||| ||||||| ||||||||||| |||||| || |||||||| ||||||||||| |||||||| |
|
|
| T |
29949548 |
atgagttcagttccttgaatctttggccggcttgcaaatttgatgtcgtgagttttgaggaatgattctgcagcttttga |
29949469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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