View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5845-Insertion-12 (Length: 193)
Name: NF5845-Insertion-12
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 8e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 39143230 - 39143048
Alignment:
| Q |
9 |
ctttacacggccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttttaactgaagatccctaacccgctcttca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39143230 |
ctttacacggccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttttaactgaagatccctaacccgctcttca |
39143131 |
T |
|
| Q |
109 |
aattgcttcttcgtcttcgatgacacaaagtcccgactcaaaggagcatcatctttttctttatcttgattaccatactgcga |
191 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39143130 |
aattgcttcttcatcttcgatgacacaaagtcccgactcaaaggagcatcatctttttctttatcttgattaccatactgcga |
39143048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 39130074 - 39129964
Alignment:
| Q |
10 |
tttacacggccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttttaactgaagatccctaacccgctcttcaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| || ||||| | ||||||||||||||||||| ||| || ||||| ||||||||| |
|
|
| T |
39130074 |
tttacacggccttcaaagagcttctcctttgactcaagctccaccacttgttctccgcaccttttctcttttaactcaagctctttaacctgctcttcaa |
39129975 |
T |
|
| Q |
110 |
attgcttcttc |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
39129974 |
attgcttcttc |
39129964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 39495023 - 39495134
Alignment:
| Q |
9 |
ctttacacggccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttttaactgaagatccctaacccgctcttca |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||| | | ||| |
|
|
| T |
39495023 |
ctttacacgaccttcaaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatca |
39495122 |
T |
|
| Q |
109 |
aattgcttcttc |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39495123 |
aattgcttcttc |
39495134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 39427195 - 39427297
Alignment:
| Q |
18 |
gccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttttaactgaagatccctaacccgctcttcaaattgcttc |
117 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| ||||||||| |||| | || |||||||||||||||| ||| | |||||| |||||||||||||||| |
|
|
| T |
39427195 |
gccttcaaagtgcttctcctttgactcaagcaccaccgctctttcttcgcatcttttctcttttaactcaagcctcttaaccctctcttcaaattgcttc |
39427294 |
T |
|
| Q |
118 |
ttc |
120 |
Q |
| |
|
||| |
|
|
| T |
39427295 |
ttc |
39427297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 39124113 - 39124001
Alignment:
| Q |
10 |
tttacacggccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttttaactgaagatccctaacccgctcttcaa |
109 |
Q |
| |
|
||||||| ||||| ||||||||||||||| | ||| ||||||||| ||||||| || |||||||||||||||| || ||| ||||| ||||||||| |
|
|
| T |
39124113 |
tttacacagcctttaaagagcttctcctttgactcgagctccaccattcgttctctgcagcttttctcttttaacttaatctccataacctgctcttcaa |
39124014 |
T |
|
| Q |
110 |
attgcttcttcgt |
122 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
39124013 |
attgcttattcgt |
39124001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University