View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5845-Insertion-13 (Length: 176)

Name: NF5845-Insertion-13
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5845-Insertion-13
NF5845-Insertion-13
[»] chr4 (2 HSPs)
chr4 (77-173)||(38031612-38031708)
chr4 (9-77)||(38031668-38031736)
[»] chr6 (2 HSPs)
chr6 (77-173)||(32348621-32348717)
chr6 (17-77)||(32348601-32348661)
[»] chr3 (2 HSPs)
chr3 (77-173)||(28777267-28777363)
chr3 (9-77)||(28777239-28777307)
[»] chr5 (2 HSPs)
chr5 (77-167)||(19229285-19229375)
chr5 (17-77)||(19229335-19229395)
[»] chr1 (2 HSPs)
chr1 (77-167)||(7110677-7110767)
chr1 (9-77)||(7110727-7110795)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 38031708 - 38031612
Alignment:
Q  77 tattgaggttttgcttctttatggatttttgattattgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagcttgtgtt 173  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38031708 tattgaggttttgcttctttatggatttttgatttttgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagcttgtgtt 38031612  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 38031736 - 38031668
Alignment:
Q  9 gtttatgtgttgttgtttctggaatttttattgaggttttgcttctttatggatttttgattattgtgt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38031736 gtttatgtgttgttgtttctggaatttttattgaggttttgcttctttatggatttttgatttttgtgt 38031668  T

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Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 32348621 - 32348717
Alignment:
Q  77 tattgaggttttgcttctttatggatttttgattattgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagcttgtgtt 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32348621 tattgaggttttgcttctttatggatttttgatttttgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagctcgtgtt 32348717  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 32348601 - 32348661
Alignment:
Q  17 gttgttgtttctggaatttttattgaggttttgcttctttatggatttttgattattgtgt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32348601 gttgttgtttctggaatttttattgaggttttgcttctttatggatttttgatttttgtgt 32348661  T

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Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 28777267 - 28777363
Alignment:
Q  77 tattgaggttttgcttctttatggatttttgattattgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagcttgtgtt 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28777267 tattgaggttttgcttctttatggatttttgatttttgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagctcgtgtt 28777363  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 28777239 - 28777307
Alignment:
Q  9 gtttatgtgttgttgtttctggaatttttattgaggttttgcttctttatggatttttgattattgtgt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28777239 gtttatgtgttgttgtttctggaatttttattgaggttttgcttctttatggatttttgatttttgtgt 28777307  T

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Target: chr5 (Bit Score: 87; Significance: 6e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 19229375 - 19229285
Alignment:
Q  77 tattgaggttttgcttctttatggatttttgattattgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagct 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19229375 tattgaggttttgcttctttatggatttttgatttttgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagct 19229285  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 19229395 - 19229335
Alignment:
Q  17 gttgttgtttctggaatttttattgaggttttgcttctttatggatttttgattattgtgt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19229395 gttgttgtttctggaatttttattgaggttttgcttctttatggatttttgatttttgtgt 19229335  T

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Target: chr1 (Bit Score: 87; Significance: 6e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 7110767 - 7110677
Alignment:
Q  77 tattgaggttttgcttctttatggatttttgattattgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagct 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7110767 tattgaggttttgcttctttatggatttttgatttttgtgtttcttctccttttgtggtgtgtttatgttccaagggtggttttgtgagct 7110677  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 7110795 - 7110727
Alignment:
Q  9 gtttatgtgttgttgtttctggaatttttattgaggttttgcttctttatggatttttgattattgtgt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7110795 gtttatgtgttgttgtttctggaatttttattgaggttttgcttctttatggatttttgatttttgtgt 7110727  T

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