View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5845-Insertion-2 (Length: 939)
Name: NF5845-Insertion-2
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 868; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 868; E-Value: 0
Query Start/End: Original strand, 9 - 937
Target Start/End: Complemental strand, 51734057 - 51733127
Alignment:
| Q |
9 |
tctccaagtgcttagatacttatcaattggtatcagagacaagtcgttgctttgcttggaaagactgagtaaagtgttgtagagtggcagatgtcagctc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
51734057 |
tctccaagtgcttagatacttatcaattggtattagagacaagtcgttgctttgcttggaaagactgagtaaagtgtcgtagagtgccagatgtcagctc |
51733958 |
T |
|
| Q |
109 |
tcagctgcggtgctatgataaagacttggatattatggg-tgcccaagtacacgttgattagtatgggatgtttgatggagtatttaaatgacttggttc |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733957 |
tcagctgcggtgctatgataaagacttggatattatggggtgcccaagtacacgttgattagtatgggatgtttgatggagtatttaaatgacttggttc |
51733858 |
T |
|
| Q |
208 |
ttccctttgatagctagattttatgggagtgttccccaagtacttagatacttattcaaaggtcagaagtcaaagctgaccctgggtcctttttgaacct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733857 |
ttccctttgatagctagattttatgggagtattccccaagtacttagatacttattcaaaggtcagaagtcaaagctgaccctgggtcctttttgaacct |
51733758 |
T |
|
| Q |
308 |
tttattcttaatgggcttgggattttaggttttccagcatgattaaagtcatgctaatcctatctggcccctcttcagctaggtctgatgagaattgcaa |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733757 |
tttattcttaatggggttgggattttaggttttccagcatgattaaagtcatgctaatcctatctggcccctcttcagctaggtctgatgagaattgcaa |
51733658 |
T |
|
| Q |
408 |
ggatagtccccttttgacaatgctacaaatagttgatcaacattatatgactaatcactaactctaacataactgaataaacttaacatgctcaagtcct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733657 |
ggatagtccccttttgacaatgctacaaatagttgatcaacattatatgactaatcactaactctaacataactgaataaacttaacatgctcaagtcct |
51733558 |
T |
|
| Q |
508 |
acataaaaaacagtgtccagttttgcaataaaattctcaagacatgcctgaaacccatgcacaaagacaacaatcttcaacacgcgaacattactttttg |
607 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
51733557 |
acataaaaaacagtgtacagttttgcaataaaattctcaagacatgcctgaaacccatgcacaaagacaacaatcttcaacacacgaacattactttttg |
51733458 |
T |
|
| Q |
608 |
gtgcagatttcttcctgaaagtatgactccccagcccatttgttaagctatgtgaatccacaagtccaacatgtcctaggagtggaatttcactggtact |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51733457 |
gtgcagatttcttcctgaaagtatgactccccagcccatttgttaagctatgtgaatccacaagtccaacatgtcctaggagtggaatttcactggtact |
51733358 |
T |
|
| Q |
708 |
acgccgtggtacattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgc |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51733357 |
acgccgtggtacattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgc |
51733258 |
T |
|
| Q |
808 |
a-aaaagaattgattcatcaataggccgtatctaggagctttgtagcaccgacac-acaccgacacatctggtaacgttcaattattctatttttctcaa |
905 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51733257 |
aaaaaagaattgattcatcaataggccatatctaggagctttgtagcaccgacacaacaccgacacatctggtaacgttcaattattcta-ttttctcaa |
51733159 |
T |
|
| Q |
906 |
gttattatcggtgtcaacctgtcagtatcgta |
937 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
51733158 |
gttattatcggtgtcaacctgtcagtatcgta |
51733127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 48735581 - 48735485
Alignment:
| Q |
167 |
tagtatgggatgtttgatggagtatttaaatgacttggttcttccct-ttgatagctagattttatgggagtgttccccaagtacttagatacttat |
262 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || || ||||||||||| ||||||| ||| ||||| || || ||||||||||| ||| ||| ||||| |
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|
| T |
48735581 |
tagtatggcatgttcgatggagtatttaagtggctcggttcttccctcttgataggtagcttttaaggcagggttccccaagtccttggatgcttat |
48735485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 709 - 812
Target Start/End: Complemental strand, 356184 - 356081
Alignment:
| Q |
709 |
cgccgtggtacattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgca |
808 |
Q |
| |
|
||||||||| ||||| |||| | |||||||| ||||| ||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||| |
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| T |
356184 |
cgccgtggtgcattcgtcacacgttcaacaatcacaattggtatacgtaaaggatctccaaacatttgcatgtcttgaattgattggttgttaatctgca |
356085 |
T |
|
| Q |
809 |
aaaa |
812 |
Q |
| |
|
|||| |
|
|
| T |
356084 |
aaaa |
356081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 356341 - 356277
Alignment:
| Q |
552 |
tgcctgaaacccatgcacaaagacaacaatcttcaacacgcgaacattactttttggtgcagatt |
616 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||| ||||||| |
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|
| T |
356341 |
tgcctgaaacccgtgcacaaagacaacaatcttcaacacgcgagcattgctttgtggggcagatt |
356277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 22318951 - 22318917
Alignment:
| Q |
9 |
tctccaagtgcttagatacttatcaattggtatca |
43 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
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|
| T |
22318951 |
tctccaagtgcttatatacttatcaattggtatca |
22318917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 24971169 - 24971072
Alignment:
| Q |
167 |
tagtatgggatgtttgatggagtatttaaatgacttggttct-tccctttgatagctagattttatgggagtgttccccaagtacttagatacttatt |
263 |
Q |
| |
|
|||||||||||| ||| |||||||||||| || |||||||| |||| ||||||||||| |||| ||||| ||||||||||| ||||||||| |||| |
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|
| T |
24971169 |
tagtatgggatgcttggtggagtatttaagtggtttggttctctccccttgatagctagcttttcagggagggttccccaagtgcttagatacctatt |
24971072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 37483135 - 37483210
Alignment:
| Q |
167 |
tagtatgggatgtttgatggagtatttaaatgacttggttcttc-cctttgatagctagattttatgggagtgttc |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||||||||| || |||||| |||| ||||| ||||| |||| |
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|
| T |
37483135 |
tagtatgggatgtttggtggagtatttaagtggcttggttcttctcccttgataactagtttttaagggagggttc |
37483210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 47484266 - 47484189
Alignment:
| Q |
186 |
gagtatttaaatgacttggttcttc-cctttgatagctagattttatgggagtgttccccaagtacttagatacttat |
262 |
Q |
| |
|
||||||| || || ||||||||||| || |||||| |||| ||||| ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
47484266 |
gagtattgaagtggcttggttcttctcccttgataactagcttttaagggagggttccccaagtgcttggatacttat |
47484189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 12973913 - 12973818
Alignment:
| Q |
168 |
agtatgggatgtttgatggagtatttaaatgacttggttc-ttccctttgatagctagattttatgggagtgttccccaagtacttagatacttat |
262 |
Q |
| |
|
||||||||||| ||| || | ||||||| ||||||||||| |||||||||||||||| ||||| || || ||||||| || |||| |||||||| |
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|
| T |
12973913 |
agtatgggatgcttggtgaaatatttaagtgacttggttctttccctttgatagctaacttttaaggaagagttcccctggtgcttaaatacttat |
12973818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 39388345 - 39388428
Alignment:
| Q |
180 |
ttgatggagtatttaaatgacttggttcttccct-ttgatagctagattttatgggagtgttccccaagtacttagatacttat |
262 |
Q |
| |
|
||||| |||||||||| || ||||||||||||| ||||||||||| ||||| | ||| ||| ||||||| ||| ||||||||| |
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|
| T |
39388345 |
ttgattgagtatttaagtggattggttcttccctcttgatagctagcttttaagagagggtttcccaagtgctttgatacttat |
39388428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 35640783 - 35640701
Alignment:
| Q |
167 |
tagtatgggatgtttgatggagtatttaaatgacttggttcttcc-ctttgatagctagattttatgggagtgttccccaagt |
248 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| || |||||||||||| | || |||||||| ||||| ||||| | ||||||||| |
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|
| T |
35640783 |
tagtatgggatgcttggtggagtacttaagtggcttggttcttccaccttaatagctagcttttaagggagggctccccaagt |
35640701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 846399 - 846289
Alignment:
| Q |
153 |
aagtacacgttgattagtatgggatgtttgatggagtatttaaatgacttggttcttccc-tttgatagctagattttatgggagtgttccccaagtact |
251 |
Q |
| |
|
|||| ||| |||| ||||||| |||| | | |||||||||||| || ||||||||||||| ||||| ||||| ||||| ||||| |||| | |||||| |
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|
| T |
846399 |
aagtccacattgagtagtatgagatgctcggtggagtatttaagtggcttggttcttcccttttgacagctaacttttaagggaggattcctcgagtact |
846300 |
T |
|
| Q |
252 |
tagatacttat |
262 |
Q |
| |
|
|| |||||||| |
|
|
| T |
846299 |
tacatacttat |
846289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 8422928 - 8422827
Alignment:
| Q |
162 |
ttgattagtatgggatgtttgatggagtatttaaatgacttggttctt-ccctttgatagctagattttatgggagtgttccccaagtacttagatactt |
260 |
Q |
| |
|
|||| |||||||||||| | |||||||||||| || |||||||||| ||| ||||||||||| || || ||||| |||| |||||| ||||||| || |
|
|
| T |
8422928 |
ttgaatagtatgggatgctcagtggagtatttaagtggcttggttcttcccccttgatagctagcttataagggagggttctccaagttgttagatattt |
8422829 |
T |
|
| Q |
261 |
at |
262 |
Q |
| |
|
|| |
|
|
| T |
8422828 |
at |
8422827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 897 - 934
Target Start/End: Original strand, 41542507 - 41542544
Alignment:
| Q |
897 |
ttttctcaagttattatcggtgtcaacctgtcagtatc |
934 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
41542507 |
ttttctcaaattattatcggtgtcaacgtgtcagtatc |
41542544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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