View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845-Insertion-3 (Length: 927)
Name: NF5845-Insertion-3
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 238 - 927
Target Start/End: Original strand, 4074772 - 4075462
Alignment:
| Q |
238 |
gtatttttaagggatgattgactcaaacttgtgacgactaattaagctgaaaaatgtttgtatcatcttatctaaatagtgcagtttgaattagagttaa |
337 |
Q |
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| T |
4074772 |
gtatttttaagggatgattgactcaaacttgagacaactaattaagctgaaaaatgtttgtatcatcttatctaaatagtgcagtttgaattagagttaa |
4074871 |
T |
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| Q |
338 |
cgtaaaactttgtcgaacaattttttaaaagattttaaagacttgttgactaaagggctctaacaagaatattttggatctaactactgtcgccattact |
437 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4074872 |
cgtataactttgtcgaacaattttttaaaagcttttaaagacttgttgactaaagggctctaacaagaatattttggatccaactactgtcgccattact |
4074971 |
T |
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| Q |
438 |
tttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcattgtgatgaaaaagatacatgacattnnnnnnnnnncac |
537 |
Q |
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| T |
4074972 |
tttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcattgtgatgaaaaagatacatgacattaaaaaaaaaacac |
4075071 |
T |
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| Q |
538 |
tagcatatgcatgttttttaaggattagggataacaatattctttacacttcaacttccctcacctcagtcaacatcaagagaaaacaagataacaaacc |
637 |
Q |
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| T |
4075072 |
tagcatatgcatgttttttaaggattagggataacaatattctttacacttcaacttccctcacctcagtcaacatcaagagaaaacaagataacaaaac |
4075171 |
T |
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| Q |
638 |
aaaccaaacataaatgtaacgtattgtacttaaagttttcaatatcaaatgtttgtcatctatggaaaatataggcataaagaagctcattccaagtatc |
737 |
Q |
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| T |
4075172 |
aaaccaaagataaatgtaacatattttacttcaagttttcaatatcaaatgtttgtcatctatggaaaatataggcataaagaagctcattccaagtatc |
4075271 |
T |
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| Q |
738 |
aggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaaggctcccattgcttcctatagatagat |
837 |
Q |
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| T |
4075272 |
aggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttagaggctcccattgcttcctatagatagat |
4075371 |
T |
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| Q |
838 |
ggatggccttcttttctgtactctgatagctgtgtgatgttaagcaattgaacattcaaacctctagttttc-aatcttctagaacatttt |
927 |
Q |
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| T |
4075372 |
ggatgaccttcttttctgtactctgagagttgtgttatgttaagcaattgaacattcaaacctcttcttttcaaatcttgtagaacatttt |
4075462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 4074596 - 4074772
Alignment:
| Q |
7 |
cattattgaagcataaaacattttgtatcatcttatcattttgtatgttggcaaaggactttgtatttcttacttccttcttggaattcaagacagttcg |
106 |
Q |
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| T |
4074596 |
cattattgaagcataaaacattttgtatcatcttatcattttgtatgttggcaaaggactttgtatttcttacatccttcttggaattcaagacagttcg |
4074695 |
T |
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| Q |
107 |
atgatatttgtgttccatttg-nnnnnnnnagtttgaatcaagtatcctgctagaaactacataaactattcattcg |
182 |
Q |
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| T |
4074696 |
atgatatttgtgtcccattcgtttttttttagtttgaatcaagtatcctgctagaaactacataaactattcattcg |
4074772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 775
Target Start/End: Complemental strand, 5232953 - 5232904
Alignment:
| Q |
726 |
attccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcat |
775 |
Q |
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| T |
5232953 |
attccaagtatcaggaacaccaggcaaacaccaatgtatacaatcagcat |
5232904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 702 - 911
Target Start/End: Complemental strand, 25824924 - 25824715
Alignment:
| Q |
702 |
gaaaatataggcataaagaagctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctct |
801 |
Q |
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|||||||||||||||||||||||||||||| |||||| || || || || |||||||||||||||||||||||| |||||||||||||| || ||| |
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| T |
25824924 |
gaaaatataggcataaagaagctcattccatacatcaggaactcctggtaggcaccaatgtatgcaatctgcataaccatttggatttgatatctgttct |
25824825 |
T |
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| Q |
802 |
tctgttaaaggctcccattgcttcctatagatagatggatggccttcttttctgtactctgatagctgtgtgatgttaagcaattgaacattcaaacctc |
901 |
Q |
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| T |
25824824 |
tgagttagaggttcccactgtttcctatagatagaagggtgaccttcttttctgtattctgagagttgtgtgatgttaagcatttgaacatttaaacctt |
25824725 |
T |
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| Q |
902 |
tagttttcaa |
911 |
Q |
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| T |
25824724 |
ttgttttcaa |
25824715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 761
Target Start/End: Complemental strand, 37804151 - 37804102
Alignment:
| Q |
712 |
gcataaagaagctcattccaagtatcaggcacaccagggagacaccaatg |
761 |
Q |
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| T |
37804151 |
gcataaagaatctcattccacgaatcgggaacaccagggagacaccaatg |
37804102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 770
Target Start/End: Original strand, 19411833 - 19411880
Alignment:
| Q |
723 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
770 |
Q |
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| T |
19411833 |
ctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatc |
19411880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 770
Target Start/End: Original strand, 50750156 - 50750203
Alignment:
| Q |
723 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
770 |
Q |
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| T |
50750156 |
ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
50750203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 712 - 758
Target Start/End: Complemental strand, 7821917 - 7821871
Alignment:
| Q |
712 |
gcataaagaagctcattccaagtatcaggcacaccagggagacacca |
758 |
Q |
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| T |
7821917 |
gcataaagtagctcattccatgtatcaggtacaccaggaagacacca |
7821871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 761
Target Start/End: Complemental strand, 7812386 - 7812337
Alignment:
| Q |
712 |
gcataaagaagctcattccaagtatcaggcacaccagggagacaccaatg |
761 |
Q |
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| T |
7812386 |
gcataaagtagctcattccatgtatcaggtacaccgggaagacaccaatg |
7812337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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