View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845-Insertion-4 (Length: 870)
Name: NF5845-Insertion-4
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 264 - 799
Target Start/End: Original strand, 4033236 - 4033772
Alignment:
| Q |
264 |
taacttcattgaagttattttttgaatgaaaggtggtgttaatacgacaccgttttgaaggttagaagaagagaaaaatggttatggaagagtgaatgaa |
363 |
Q |
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| T |
4033236 |
taacttcattgaagttattttttgaatgaaaggtggtgttaatacgacaccgttttgaaggttagaagaagagaaaaatggttatggaagagtgaatgaa |
4033335 |
T |
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| Q |
364 |
aaacaggggaatgggaagttggtgtatttatgagaaagataagttgtttttaatatggtggggtccacatcccgccaaaagtacagagagactatctaac |
463 |
Q |
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| T |
4033336 |
aaacaggggaatgggaagttggtgtatttatgagaaagataagttgtttttaatatggtggggtccacatcccgccaaaagtacagagagactatctaac |
4033435 |
T |
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| Q |
464 |
cgaaagaaagttgaaagagtgaagtataatgtaagaaaaacacacatagataaagaatttctccacttggtttatacgtttacaaattcaaattactaca |
563 |
Q |
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| T |
4033436 |
cgaaagaaagttgaaagagtgaagtataatgtaagaaaaacacacatagataaagaatttctccacttggtttatacgtttacaaattcaaattactaca |
4033535 |
T |
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| Q |
564 |
tcattatattatacttgagttataattattatcatataaatattggtggtccatgtgccataagcggtaaatatttaggtttgttaaacattttatcaag |
663 |
Q |
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| T |
4033536 |
tcattatattatacttgagttataattattatcatataaatattggtggtccatgtgccataagcggtaaatatttaggtttgttaaccattttatcaag |
4033635 |
T |
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| Q |
664 |
atttcaatctctttagaaagatcaacttcctaaatgaatttcaattactataaagggattagttacttgcgcaatagttgacc-nnnnnnnntttgatag |
762 |
Q |
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| T |
4033636 |
atttcaatctctttagaaagatcaacttcttaaatgaatttcaattactatgaagggattagttacttgcgcaatagttgaccaaaaaaaaatttgatag |
4033735 |
T |
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| Q |
763 |
tcattgagacggtttacatttgctagattatgatctt |
799 |
Q |
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| T |
4033736 |
tcattgagacggtttacatttactagattatgatctt |
4033772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 4032981 - 4033202
Alignment:
| Q |
9 |
ctcagacggaatgtatccctggagagattttccggcgagtgcaattccaactacacgcggctccggtacaccggatatattcgcacaggagattcctgac |
108 |
Q |
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| T |
4032981 |
ctcagacggaatgtatccctggagagattttccggcgagtgcaattccaactacacgcggctccggtacaccggatatattcgcacaggatattcctgac |
4033080 |
T |
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| Q |
109 |
catccgcaggggtagaaatctcctccgttccagtcggagaaagcgccgtcgatggattgatcgacggcagcttttagagagagaagtgcaagaccatctg |
208 |
Q |
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| T |
4033081 |
catccgcaggggtaggaatctcctccgttccagtcggagaaagcgccgtcgatggattgatcgacggcagcttttagagagagaagggcaagaccatctg |
4033180 |
T |
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| Q |
209 |
atgagagtgaaaatactgagct |
230 |
Q |
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| T |
4033181 |
atgagagtgaaaatactgagct |
4033202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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