View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845-Insertion-5 (Length: 703)
Name: NF5845-Insertion-5
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 165 - 442
Target Start/End: Original strand, 47504282 - 47504557
Alignment:
| Q |
165 |
atcaggaagaataagaccttcacattcatcaattgttttcaaggtttgagacaagggaatcggtgttggtaatatgtttcttttaagttttgaaatgtgc |
264 |
Q |
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| T |
47504282 |
atcaggaagaataagaccttcacattcatcaattgttttcaaggtttgagacaagggaatcggtgttggtaatatgtttcttttaagttttgaaatgtgc |
47504381 |
T |
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| Q |
265 |
atgttacnnnnnnngcattgaaannnnnnnnnnn-ctttctatggttttaatgctaaatttctaaaccattgttttcatattaattttcatttgtgttgt |
363 |
Q |
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| T |
47504382 |
atgttactttttttgcattgaattttctttattttctttctatggttttaatgctaaatttctaaaccattgttttcatattaattttcatttgtgttgt |
47504481 |
T |
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| Q |
364 |
tctgtctgaagctttagtggacttcccatttcattatatatatacaaatgcctttcaacatatatatcattggaacctt |
442 |
Q |
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| T |
47504482 |
tctgtctgtagctttagtggacttctcatttcattatataca---aaattcctttcaacatatatatcattggaacctt |
47504557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 442 - 664
Target Start/End: Original strand, 47504953 - 47505168
Alignment:
| Q |
442 |
ttcatttttatttggtcgttcagtttgcagtcaacggtacatgagaaattatgaccatcctatcctattaaagtgttaattatgttggtgt-ttttgaat |
540 |
Q |
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| T |
47504953 |
ttcatttttatttggtcgttcaatttgcagtcaaaggtacatgagaaattatgaccatcctatcctattaaagtgttaattatgttggagtgttttgaat |
47505052 |
T |
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| Q |
541 |
gttgagatttagatcgagatgcccatctatgcgaacgtcaacttttctctacttattaggtatttttcgacaacgatacaactactttccgttatttatt |
640 |
Q |
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| T |
47505053 |
gttgagatttagatcgagatgcccatctatgcgaacg--------tctctacttattaggtatttttcgacaacgatacaactactttctgttatttatt |
47505144 |
T |
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| Q |
641 |
ttccggtgacgatacaccaaatac |
664 |
Q |
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| T |
47505145 |
ttccggtgacgatacaccaaatac |
47505168 |
T |
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