View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845-Insertion-6 (Length: 687)
Name: NF5845-Insertion-6
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 428 - 687
Target Start/End: Complemental strand, 45388598 - 45388340
Alignment:
| Q |
428 |
attttataaactaaatacttcatatgtagtctaaagatatctcatactgttaaaatatattggactgaccatgttatcatacgcagaaaattgttatatt |
527 |
Q |
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| T |
45388598 |
attttataaactaaatacttcatatgtagtctaaa-atatctcatactgttaaaatatattggactgaccatgttatcatacgcagaaaattgttatatt |
45388500 |
T |
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| Q |
528 |
ggccattttaattgttcttgtgccccttaaaaacgtcatatctttctcggttcataatccctgaatctatcgggtggtaactccaactcgctgttgttcg |
627 |
Q |
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| T |
45388499 |
ggccattttaattgttcttgtgccccttaaaaacgtcatatctctctcggttcataatccctgaatctatcgggtggtaactccaactcgctgttgttcg |
45388400 |
T |
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| Q |
628 |
ggtgttatgacatcattcacctttatcatatatcaaaaaacattacttgtactatatttc |
687 |
Q |
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| T |
45388399 |
ggtgttatgacatcattcacctttatcatatatcaaaaaacattacttgtactatatttc |
45388340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 181 - 357
Target Start/End: Complemental strand, 45389530 - 45389355
Alignment:
| Q |
181 |
gtttgatttcaattacttttttgataagatatattgttaaaaagaatggataaaatatttccnnnnnnnntcaataaaaatgattctgnnnnnnncttta |
280 |
Q |
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| T |
45389530 |
gtttgatatcaattacttttttgataagatatattgttaaaaagaatggataaaatatttccaaaaaaa-tcaataaaaatgattctgtttttttcttta |
45389432 |
T |
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| Q |
281 |
tgaataaatttgcatgcttaatctttttatactttctggtcataaattttcnnnnnnnaaagataaaacgttattgc |
357 |
Q |
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| T |
45389431 |
tgaataaatttgcatgcttaatctttttatactttctggtcgtaaattttctttttttaaagataaaacgttattgc |
45389355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 45389703 - 45389625
Alignment:
| Q |
8 |
atactctacatatggaccatataattttcaattttgtaagattggtatactttctgttgaagtgggaattgctattttg |
86 |
Q |
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| T |
45389703 |
atactctacatatggaccatagaattttcaattttgtaagattggtatactttctgttgaagtgggaattgctattttg |
45389625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 31890602 - 31890679
Alignment:
| Q |
8 |
atactctacatatggaccatataattttcaattttgtaagattggtatactttctgttgaagtgggaattgctatttt |
85 |
Q |
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| T |
31890602 |
atactctacatatggaccttagaatttccagttttgtaaaatttctatagtttttgttgaagtgggaatttctatttt |
31890679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 31890787 - 31890836
Alignment:
| Q |
189 |
tcaattacttttttgataagatatattgttaaaaagaatggataaaatat |
238 |
Q |
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| T |
31890787 |
tcaattacttttctgataagacatattattaaaaagaatagataaaatat |
31890836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 15601926 - 15601857
Alignment:
| Q |
17 |
atatggaccatataattttcaattttgtaagattggtatactttctgttgaagtgggaattgctattttg |
86 |
Q |
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| T |
15601926 |
atatggaccttagaattttcagttttgtaagatttgtatactttctgttgaagtgggaattgctattttg |
15601857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 15633238 - 15633169
Alignment:
| Q |
17 |
atatggaccatataattttcaattttgtaagattggtatactttctgttgaagtgggaattgctattttg |
86 |
Q |
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| T |
15633238 |
atatggaccttagaattttcagttttgtaagatttttatactttctgttgaagtgggaattgctattttg |
15633169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 10970655 - 10970591
Alignment:
| Q |
22 |
gaccatataattttcaattttgtaagattggtatactttctgttgaagtgggaattgctattttg |
86 |
Q |
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| T |
10970655 |
gaccataaaattttcagttttgtaagacttgtatactttctgttgaactgggaattgctattttg |
10970591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 15601718 - 15601668
Alignment:
| Q |
189 |
tcaattacttttttgataagatatattgtt-aaaaagaatggataaaatat |
238 |
Q |
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| T |
15601718 |
tcaattacatttttgataagatatattattaaaaaagaatggataaaatat |
15601668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 41611306 - 41611228
Alignment:
| Q |
8 |
atactctacatatggaccatataattttcaattttgtaagattggtatactttctgttgaagtgggaattgctattttg |
86 |
Q |
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| T |
41611306 |
atactctacagatggaccttagaattttcacttttgtaagatttgtatggtttatgttgaagtgggaattgctattttg |
41611228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 41611121 - 41611071
Alignment:
| Q |
189 |
tcaattactttttt-gataagatatattgttaaaaagaatggataaaatat |
238 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
41611121 |
tcaattactttttttgataagatatattattaaaaagaatggataaaatat |
41611071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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