View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845-Insertion-7 (Length: 664)
Name: NF5845-Insertion-7
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 39 - 433
Target Start/End: Complemental strand, 37984562 - 37984165
Alignment:
| Q |
39 |
ggataaaaagtaaaggtagcgtaggattgaaaattgcgagaatctgagagaaccttgaaggtgaggtcaggaggaagaggccaaacaattgaattatgat |
138 |
Q |
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| T |
37984562 |
ggataaaaagtaaaggtagcgtaggattgaaaagtgcgagaatctgagagaaccttgaaggtgaggtcaggaggaagaggccaaacaattgaattatgat |
37984463 |
T |
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| Q |
139 |
tataagcgcgtttgcgagaggagtgtttggcagcatcaagaagtagagatcccattttgagagcgcgatcgatgtgatcagtgtcagcaggcattgattg |
238 |
Q |
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| T |
37984462 |
tataagcgcgtttgcgagaggagtgtttggcagcatcaagaagtagagatcccattttgagagcgcgatcgatgagatcagtatcagcaggcattgattg |
37984363 |
T |
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| Q |
239 |
aagaagattctctaaggagagatcgatggaaagagaaggacgatcggagagggagagaaattcttcgagaacgtgttcgacttccattctagggttttgt |
338 |
Q |
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| T |
37984362 |
aagaagattctctaaggagagatcgatggaaagagaaggacaatcggagagggagagaaattcttcgagaacgtgttcgacttccattctagggttttgt |
37984263 |
T |
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| Q |
339 |
gctggacaaggtctcttcgccattgat---nnnnnnnnnnnnnnnnntggaattggaatctcaggttctgaaaccgtatccataccccgaatcaatac |
433 |
Q |
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| T |
37984262 |
gctggacaaggtctcttcgccattgatgaagaagaagaagaagaagatggaattggaatctcaggttctgaaaccgtatccataccccgaatcaatac |
37984165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 456 - 664
Target Start/End: Complemental strand, 37984133 - 37983922
Alignment:
| Q |
456 |
cactatgctatgctgtgagaatataatatcatcatcatcat---aatattactgtctcgtgatgtatgatatgatttgatttgattgatttcacattcta |
552 |
Q |
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| T |
37984133 |
cactatgctatgctgtgagaatataatatcatcatcatcgtcgtaatattactgtctcgtgatgtatgatatgatttgatttgattgatttcacattcta |
37984034 |
T |
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| Q |
553 |
cactcacttactactaacttcaatcacacactaattcatttctctaaaataatcacacactgttaaatgtcttnnnnnnntgtttcattaatctagtcgg |
652 |
Q |
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| T |
37984033 |
cactcacttgctactaacttcaatcacacactaattcatttctctaaaataatcacacactgttaaatgtcttaaaaaaatgtttcattaatctagtcgg |
37983934 |
T |
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| Q |
653 |
ttatattagtta |
664 |
Q |
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| T |
37983933 |
ttatattagtta |
37983922 |
T |
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Back To:
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