View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845-Insertion-8 (Length: 381)
Name: NF5845-Insertion-8
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 8936594 - 8936221
Alignment:
| Q |
9 |
gtatgtagatgcaacacttagatgtgatannnnnnnngagagacttagatgtgatattagttaggtgttctattcttagacaagcatgcattgctaccgt |
108 |
Q |
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| T |
8936594 |
gtatgtagatgcaacacttagatgtgatatattttttgagagacttagatgtgatattagttaggtgttctcttcttagacaagcatgcattgctaccgt |
8936495 |
T |
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| Q |
109 |
cttacatatgaaaatggattgtatctaatctgttttatcaaattgctttttctgctatgatggttttgcctgactt-gtaatgtttttctttatatgtgt |
207 |
Q |
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| T |
8936494 |
cttacatatgaaaacggattgtatctaatctgttttatcaaattgctttttctgctatgatggttttgcctgactttgtaatgtttttctttatatgtgt |
8936395 |
T |
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| Q |
208 |
atggtagatgcatgtctcctttagatggtgatctatgatggtagatgcaataccaaagacgtggtcgtagttaggttctcttcttagacatgcatgtggg |
307 |
Q |
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| T |
8936394 |
atggttgatgcatgtctcctttagatggtgatctatgatggtagatgcaacaccaaagacgtggtcgtagttaggttctcttcttagacatgcatgtggg |
8936295 |
T |
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| Q |
308 |
tgtcttagatatgaaaaactaatttgtatatggtagatgcatgtcggtgtaagatttcttccctatatacacac |
381 |
Q |
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| T |
8936294 |
tgtcttaaatatgaaaaactaatttgtatatggtagatgcatgtcggtgtaagatttcttccctatatacacac |
8936221 |
T |
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