View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5845-Insertion-9 (Length: 367)

Name: NF5845-Insertion-9
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5845-Insertion-9
NF5845-Insertion-9
[»] chr5 (11 HSPs)
chr5 (9-364)||(35367471-35367816)
chr5 (180-364)||(35371107-35371291)
chr5 (210-362)||(35377062-35377214)
chr5 (106-362)||(35426021-35426292)
chr5 (106-352)||(35755462-35755723)
chr5 (174-364)||(35411265-35411455)
chr5 (180-364)||(35386619-35386803)
chr5 (106-165)||(35377274-35377333)
chr5 (83-155)||(35386843-35386915)
chr5 (83-155)||(35411489-35411561)
chr5 (90-155)||(35371331-35371396)
[»] chr1 (3 HSPs)
chr1 (102-364)||(10419869-10420146)
chr1 (189-364)||(10415085-10415260)
chr1 (83-155)||(10414964-10415036)
[»] chr7 (2 HSPs)
chr7 (174-364)||(29622624-29622814)
chr7 (83-155)||(29622518-29622590)
[»] chr8 (5 HSPs)
chr8 (174-341)||(15294360-15294527)
chr8 (174-341)||(15474729-15474896)
chr8 (189-317)||(13564902-13565030)
chr8 (115-165)||(15294551-15294601)
chr8 (115-165)||(15474920-15474970)
[»] chr3 (2 HSPs)
chr3 (193-364)||(1154281-1154452)
chr3 (83-155)||(1154505-1154577)
[»] chr2 (5 HSPs)
chr2 (174-341)||(30626672-30626839)
chr2 (281-329)||(30663637-30663685)
chr2 (281-329)||(30672317-30672365)
chr2 (174-223)||(30663716-30663765)
chr2 (174-223)||(30672396-30672445)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 35367816 - 35367471
Alignment:
Q  9 tcatctcaaggtagtagtagtacctagcagagcaacttctgcttaatttccagcaacttcacgtagtgaatttgtaacattttttatcaacattcgatga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  35367816 tcatctcaaggtagtagtagtacctagcagagcaacttctgcttaatttccagcaacttcac----------tgtaacattttttatcaacattcgatga 35367727  T
Q  109 gtagggaattcttcggaacatgctactcctattttagcaaacatcactagacactccatcattagtgtctgatctttaggaaatggcataagcaaatgtg 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35367726 gtagggaattcttcggaacatgcaactcctattttagcaaacatcactagacactccatcattagtgtctgatctttaagaaatggcataagcaaatgtg 35367627  T
Q  209 aatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatctgttggtctctttccagt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35367626 aatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatctgttggtctctttccagt 35367527  T
Q  309 gagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35367526 gagcatctctaacagtagaatcccaaagctgtaaacatctccctgtggagatactg 35367471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 35371291 - 35371107
Alignment:
Q  180 atctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaa 279  Q
    ||||| || |||||| | ||||||||||||||| ||||||||||| ||| || | ||||||||||| || |||||||  || || || ||| ||||  ||    
T  35371291 atcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctggaattttcattttgcagaattcatgcagacttagactctcagaa 35371192  T
Q  280 aacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||||| ||||| |||||||    
T  35371191 aacatgttatctgttggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccatgtggtgatactg 35371107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 210 - 362
Target Start/End: Complemental strand, 35377214 - 35377062
Alignment:
Q  210 atccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatctgttggtctctttccagtg 309  Q
    ||||||||| ||||||||| || | ||||||||||||||||| |||||||| | ||| |||||||| ||||| ||| ||||||||||||||||||||||     
T  35377214 atccactatatcaagaattccttctggaattttcatcttacaaaatttgtgtaagcttagattctcacaaaagatgttatctgttggtctctttccagta 35377115  T
Q  310 agcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatac 362  Q
    |||||||||||||||||||| ||| |||| || | |||||||||||| |||||    
T  35377114 agcatctctaacagaagaattccatagctatagatatctccctgtggtgatac 35377062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 106 - 362
Target Start/End: Complemental strand, 35426292 - 35426021
Alignment:
Q  106 tgagtagggaattcttcggaacatgctactcctattttagcaaacatcactagacac---------------tccatcattagtgtctgatctttaggaa 190  Q
    |||||||| |||||||| |||||||| | ||||||||||||||||||||||| ||||               ||||| | | |||| ||||||| || ||    
T  35426292 tgagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaaacactcctttatgttgttttccataacttgtgtttgatcttcagcaa 35426193  T
Q  191 atggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatc 290  Q
    ||| |||||||||   |||||||||||  ||||||||| || | |||||| ||||||||||||||||||| |  || | ||||||  |||||||| ||||    
T  35426192 atgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatc 35426093  T
Q  291 tgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatac 362  Q
    |||||||||||||||||| |||||||||||||||| ||| ||| |||| || | |||||||||||| |||||    
T  35426092 tgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 35426021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 352
Target Start/End: Complemental strand, 35755723 - 35755462
Alignment:
Q  106 tgagtagggaattcttcggaacatgctactcctattttagcaaacatcactagacactccatcat---------------tagtgtctgatctttaggaa 190  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||               | |||||||||||| |   |    
T  35755723 tgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacca 35755624  T
Q  191 atggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatc 290  Q
    |||| |||||  || | ||||| || | ||||||||||||| | |||||| ||||||||||||||||||| ||  | ||||||||  |||||||| ||||    
T  35755623 atggaataaggcaacgggaatctacaacctcaagaatttcttcaggaattctcatcttacagaatttgtgtagagttagattctcataaaacatgttatc 35755524  T
Q  291 tgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccct 352  Q
    ||||||||||||||| || ||||| || ||||| ||||||||| ||||||||| ||||||||    
T  35755523 tgttggtctctttccggtaagcatttccaacagcagaatcccatagctgtaaatatctccct 35755462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 174 - 364
Target Start/End: Complemental strand, 35411455 - 35411265
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 273  Q
    ||||| ||||| || |||||| | ||||||||||||||| ||||||||||| ||| || | | ||||||||| || |||||||  || || || ||| ||    
T  35411455 tgtctcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctgaaattttcattttgcagaattcatgtagacttagactc 35411356  T
Q  274 tcgcaaaacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    ||  ||||  || ||| ||||||||||||| |||||| ||||||||  |||||||||||||||||||| | ||||||| |||| |||||||    
T  35411355 tcagaaaagttgttatttgttggtctctttgcagtgaacatctctagtagaagaatcccaaagctgtagatatctccccgtggtgatactg 35411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 35386803 - 35386619
Alignment:
Q  180 atctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaa 279  Q
    ||||| || |||||| | |||||| || ||||| ||||||||||| ||| || | |||||||| || || |||||||| || || || |   ||||  ||    
T  35386803 atcttcagcaaatggaaaaagcaattgagaatctactatctcaaggattgcttctggaatttttattttgcagaatttatgcagacttaatctctcagaa 35386704  T
Q  280 aacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    ||  || ||| ||||||||||||||| |||| ||||||||  |||||||||||||||||||| | |||||||| ||| |||||||    
T  35386703 aagttgttatttgttggtctctttccggtgaacatctctagtagaagaatcccaaagctgtagatatctccctttggtgatactg 35386619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 35377333 - 35377274
Alignment:
Q  106 tgagtagggaattcttcggaacatgctactcctattttagcaaacatcactagacactcc 165  Q
    ||||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||||    
T  35377333 tgagtagggaattcttcagaacatgcaattcctatattagcaaacatcactagacactcc 35377274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 35386915 - 35386843
Alignment:
Q  83 taacattttttatcaacattcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcac 155  Q
    |||||| ||||||||||||||||||||||| ||  ||||  |||||||| ||||| |||  ||||||||||||    
T  35386915 taacatcttttatcaacattcgatgagtagtgacctctttagaacatgcgactccaattgcagcaaacatcac 35386843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 35411561 - 35411489
Alignment:
Q  83 taacattttttatcaacattcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcac 155  Q
    |||||| |||||||||||||||||||| ||| || || || || ||||| ||||| ||| |||||||||||||    
T  35411561 taacatcttttatcaacattcgatgagcaggaaactcgtcagagcatgcaactccgattctagcaaacatcac 35411489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 35371396 - 35371331
Alignment:
Q  90 ttttatcaacattcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcac 155  Q
    |||||||||||||||||||| |||  | ||||| |||||||| ||||| |||  ||||||||||||    
T  35371396 ttttatcaacattcgatgagcaggagactcttcagaacatgcaactccaattgcagcaaacatcac 35371331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 102 - 364
Target Start/End: Original strand, 10419869 - 10420146
Alignment:
Q  102 tcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcactagacactccat---------------cattagtgtctgatcttta 186  Q
    ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| |               |||||||||||||||||||    
T  10419869 tcgatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcactagacactccttaatgtttttttccgtcattagtgtctgatcttta 10419968  T
Q  187 ggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||     
T  10419969 ggaaatggcataagcaaatgtgaatccactatctcaagaatttctacaggaattttcatcttacagaatttgtgaaggctaagattctggctaaacatgt 10420068  T
Q  287 tatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  10420069 tatctgttggtctctttccagtgagcatctctaacaagagaatcccaaagctgtaaacatctccctggggagatactg 10420146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 364
Target Start/End: Original strand, 10415085 - 10415260
Alignment:
Q  189 aaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgcta 288  Q
    |||||||| ||| || |||||||| |||||||| || ||| || | ||||||||||| || |||||||  || || ||  || ||||  |||||||| ||    
T  10415085 aaatggcaaaagtaattgtgaatctactatctcgaggattccttctggaattttcattttgcagaattcatgtagactttgactctcagaaaacatgtta 10415184  T
Q  289 tctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||    
T  10415185 tttgttggtctctttccagtgagcatctctaacagaagaatcccaaagctatagatatctccctgtggtgatactg 10415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 10414964 - 10415036
Alignment:
Q  83 taacattttttatcaacattcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcac 155  Q
    |||||| |||||||||||||||||||| ||| | |||||| |||||||| ||||| |||  | ||||||||||    
T  10414964 taacatcttttatcaacattcgatgagaaggaacttcttcagaacatgcaactccgattgcaccaaacatcac 10415036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 174 - 364
Target Start/End: Original strand, 29622624 - 29622814
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 273  Q
    |||| |||||| || |||||| ||||| ||| | ||||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||| | ||||    
T  29622624 tgtccgatcttcagcaaatggtataagtaaacgggaatccactatctcaagaattccttctggaatcttcatcttacagaatttgtgtaggcttaaattc 29622723  T
Q  274 tcgcaaaacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    || ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||    
T  29622724 tcacaaaacatgttatctgctggtctctttccagtgagcatctctaacagaagaatgccaaagctgtagatatctccctgtggtgatactg 29622814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 29622518 - 29622590
Alignment:
Q  83 taacattttttatcaacattcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcac 155  Q
    |||||| |||||| | ||||||||||| ||| || ||||  |||||||| ||||| ||| |||||||||||||    
T  29622518 taacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaattctagcaaacatcac 29622590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 341
Target Start/End: Complemental strand, 15294527 - 15294360
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 273  Q
    ||||||||||| |   ||||| |||||| |||| ||| ||||||||||||||||| || | ||||||||||||||||| ||||| || || || ||||||    
T  15294527 tgtctgatcttcaaccaatggaataagccaatgagaacccactatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattc 15294428  T
Q  274 tcgcaaaacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgta 341  Q
    || || |||||||||| ||||||||||||||| |||||||| || ||||| ||||||||| |||||||    
T  15294427 tcacagaacatgctatttgttggtctctttccggtgagcatttccaacagcagaatcccatagctgta 15294360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 341
Target Start/End: Complemental strand, 15474896 - 15474729
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 273  Q
    ||||||||||| |   ||||| |||||| |||| ||| ||||||||||||||||| || | ||||||||||||||||| ||||| || || || ||||||    
T  15474896 tgtctgatcttcaaccaatggaataagccaatgagaacccactatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattc 15474797  T
Q  274 tcgcaaaacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgta 341  Q
    || || |||||||||| ||||||||||||||| |||||||| || ||||| ||||||||| |||||||    
T  15474796 tcacagaacatgctatttgttggtctctttccggtgagcatttccaacagcagaatcccatagctgta 15474729  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 13565030 - 13564902
Alignment:
Q  189 aaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgcta 288  Q
    |||||||||||||||| ||  |||||||||| |||| ||| || | |||||||||||||||||| | ||||| ||  | |||   ||| |||||||| ||    
T  13565030 aaatggcataagcaaacgttgatccactatcgcaaggattccttctggaattttcatcttacagtaattgtgtagatttagaccgtcggaaaacatgata 13564931  T
Q  289 tctgttggtctctttccagtgagcatctc 317  Q
    || |||||||||||||| |||||||||||    
T  13564930 tccgttggtctctttccggtgagcatctc 13564902  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 15294601 - 15294551
Alignment:
Q  115 aattcttcggaacatgctactcctattttagcaaacatcactagacactcc 165  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||| |||    
T  15294601 aattcatcagaacatgcaactcctattttagcaaacatcactagacattcc 15294551  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 15474970 - 15474920
Alignment:
Q  115 aattcttcggaacatgctactcctattttagcaaacatcactagacactcc 165  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||| |||    
T  15474970 aattcatcagaacatgcaactcctattttagcaaacatcactagacattcc 15474920  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 193 - 364
Target Start/End: Complemental strand, 1154452 - 1154281
Alignment:
Q  193 ggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatctg 292  Q
    |||||||||||| ||   || ||||||||||| ||| || | | ||||||||| ||||| || | ||  ||||| | |||||| ||||| || ||||  |    
T  1154452 ggcataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaactcgtataggcttaaattctcacaaaatatactattgg 1154353  T
Q  293 ttggtctctttccagtgagcatctctaacagaagaatcccaaagctgtaaacatctccctgtggagatactg 364  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  1154352 ttggtctctttccggtgagcatctctaacagaagaatcccaaagctgtagatatctccctgtggtgatactg 1154281  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 1154577 - 1154505
Alignment:
Q  83 taacattttttatcaacattcgatgagtagggaattcttcggaacatgctactcctattttagcaaacatcac 155  Q
    |||||| |||||||||||||||||||| ||| || ||||| | |||||| ||||| ||| |||||||||||||    
T  1154577 taacatgttttatcaacattcgatgagcaggaaactcttcagtacatgcaactccaattctagcaaacatcac 1154505  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 341
Target Start/End: Complemental strand, 30626839 - 30626672
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 273  Q
    ||||| ||||| || |||||||| ||||||||||||||| ||||||||||  ||| |  | |||| ||||||||||||||||   || || || ||| |     
T  30626839 tgtctcatcttcagcaaatggcaaaagcaaatgtgaatctactatctcaaagattccatctggaactttcatcttacagaatgcatgtagactgagactt 30626740  T
Q  274 tcgcaaaacatgctatctgttggtctctttccagtgagcatctctaacagaagaatcccaaagctgta 341  Q
     |  |||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||  |||||||    
T  30626739 ccagaaaacatgctatttgttggtctttttccagtgagcatttctaagagaagaatcccgtagctgta 30626672  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 30663685 - 30663637
Alignment:
Q  281 acatgctatctgttggtctctttccagtgagcatctctaacagaagaat 329  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  30663685 acatgctatttgttggtctctttccagtgagcatttctaatagaagaat 30663637  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 30672365 - 30672317
Alignment:
Q  281 acatgctatctgttggtctctttccagtgagcatctctaacagaagaat 329  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  30672365 acatgctatttgttggtctctttccagtgagcatttctaatagaagaat 30672317  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 30663765 - 30663716
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaa 223  Q
    ||||| ||||| || |||||||| ||||||||||||||| ||||||||||    
T  30663765 tgtctcatcttcagcaaatggcaaaagcaaatgtgaatctactatctcaa 30663716  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 30672445 - 30672396
Alignment:
Q  174 tgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaa 223  Q
    ||||| ||||| || |||||||| ||||||||||||||| ||||||||||    
T  30672445 tgtctcatcttcagcaaatggcaaaagcaaatgtgaatctactatctcaa 30672396  T

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