View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_high_1 (Length: 726)
Name: NF5845_high_1
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 278 - 555
Target Start/End: Complemental strand, 47504557 - 47504282
Alignment:
| Q |
278 |
aaggttccaatgatatatatgttgaaaggcatttgtatatatataatgaaatgagaagtccactaaagcttcagacagaacaacacaaatgaaaattaat |
377 |
Q |
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| T |
47504557 |
aaggttccaatgatatatatgttgaaaggaattt---tgtatataatgaaatgagaagtccactaaagctacagacagaacaacacaaatgaaaattaat |
47504461 |
T |
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| Q |
378 |
atgaaaacaatggtttagaaatttagcattaaaaccatagaaag-nnnnnnnnnnntttcaatgcnnnnnnngtaacatgcacatttcaaaacttaaaag |
476 |
Q |
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| T |
47504460 |
atgaaaacaatggtttagaaatttagcattaaaaccatagaaagaaaataaagaaaattcaatgcaaaaaaagtaacatgcacatttcaaaacttaaaag |
47504361 |
T |
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| Q |
477 |
aaacatattaccaacaccgattcccttgtctcaaaccttgaaaacaattgatgaatgtgaaggtcttattcttcctgat |
555 |
Q |
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| T |
47504360 |
aaacatattaccaacaccgattcccttgtctcaaaccttgaaaacaattgatgaatgtgaaggtcttattcttcctgat |
47504282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 47505168 - 47504953
Alignment:
| Q |
56 |
gtatttggtgtatcgtcaccggaaaataaataacggaaagtagttgtatcgttgtcgaaaaatacctaataagtagagaaaagttgacgttcgcatagat |
155 |
Q |
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| T |
47505168 |
gtatttggtgtatcgtcaccggaaaataaataacagaaagtagttgtatcgttgtcgaaaaatacctaataagtagaga--------cgttcgcatagat |
47505077 |
T |
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| Q |
156 |
gggcatctcgatctaaatctcaacattcaaaa-acaccaacataattaacactttaataggataggatggtcataatttctcatgtaccgttgactgcaa |
254 |
Q |
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| T |
47505076 |
gggcatctcgatctaaatctcaacattcaaaacactccaacataattaacactttaataggataggatggtcataatttctcatgtacctttgactgcaa |
47504977 |
T |
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| Q |
255 |
actgaacgaccaaataaaaatgaa |
278 |
Q |
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| T |
47504976 |
attgaacgaccaaataaaaatgaa |
47504953 |
T |
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