View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5845_high_10 (Length: 320)
Name: NF5845_high_10
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22230147 - 22230369
Alignment:
| Q |
18 |
gagtgaatatttttacatgaatcatgcgttnnnnnnnnnnnnctaagtttatttgtttgtaagtgtaactcaaatagtaaaatattatggttacatttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22230147 |
gagtgaatatttttacatgaatcatgcgttaaaaaaaaaaaaccaagtttatttgtttgtaagtgtaactcaaatagtaaaatattatggttacatttga |
22230246 |
T |
|
| Q |
118 |
tatgttatgtagtaaatgatgtatctgttctacattataaaccacatatacattatttattgaatagttaaatagtgaatttatcaagtaggtcactcat |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22230247 |
tatgttatgtagtaaatgatgtatgtgttctacattataaaccacatatacatcatttatcgaatagttaaatagtgaatttatcaagtaggtcactcat |
22230346 |
T |
|
| Q |
218 |
taatgtattgaagatattctttt |
240 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
22230347 |
taatgtattggagatattctttt |
22230369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 22230505 - 22230591
Alignment:
| Q |
224 |
attgaagatattcttttatcacgatcaatttgggattccaaaactggactgagttgcggttgttgccgcaaggtcatctctcctttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22230505 |
attgaagatattcttttatcacgatcaatttggggttccaaaactggactgagttgcggttgttgccgcaaggtcatctctcctttg |
22230591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University