View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_high_11 (Length: 306)
Name: NF5845_high_11
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 37983921 - 37984133
Alignment:
| Q |
1 |
ataactaatataaccgactagattaatgaaacannnnnnnaagacatttaacagtgtgtgattattttagagaaatgaattagtgtgtgattgaagttag |
100 |
Q |
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| T |
37983921 |
ataactaatataaccgactagattaatgaaacatttttttaagacatttaacagtgtgtgattattttagagaaatgaattagtgtgtgattgaagttag |
37984020 |
T |
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| Q |
101 |
tagtaagtgagtgtagaatgtgaaatcaatcaaatcaaatcatatcatacatcacgagacagtaatatt---atgatgatgatgatattatattctcaca |
197 |
Q |
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| T |
37984021 |
tagcaagtgagtgtagaatgtgaaatcaatcaaatcaaatcatatcatacatcacgagacagtaatattacgacgatgatgatgatattatattctcaca |
37984120 |
T |
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| Q |
198 |
gcatagcatagtg |
210 |
Q |
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| T |
37984121 |
gcatagcatagtg |
37984133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 37984165 - 37984215
Alignment:
| Q |
233 |
gtattgattcggggtatggatacggtttcagaacctgagattccaattcca |
283 |
Q |
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| T |
37984165 |
gtattgattcggggtatggatacggtttcagaacctgagattccaattcca |
37984215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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