View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_high_12 (Length: 298)
Name: NF5845_high_12
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1858326 - 1858094
Alignment:
| Q |
1 |
aattgaatgaatccaaaaaataaaatgaggtgatattaaaaaacggagagtcctctgtaaccataaaaagaaacggagagccctcttnnnnnnntgctta |
100 |
Q |
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| T |
1858326 |
aattgaatgaatccaaaaaataaaatttgcttatatttagaaacggagagtcctctgtaaccataaaaagaaacggagagtcctcttaaaaaaatgctta |
1858227 |
T |
|
| Q |
101 |
cactttagattagaagtagtgttgtaacnnnnnnnnnnnnnnttgcaagtgtacaatactggttggtaaatgaatgtatcgcaacccaaaaacgtataaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
1858226 |
cactttagattagaagtagtgttgtaacaaaaaaaataaaaattgcaagtgtacaatactgattggtaaatgaatgtatcgcaatccaaaaacgtataaa |
1858127 |
T |
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| Q |
201 |
taagatgacacaagtctctgtatctctttatac |
233 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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| T |
1858126 |
taagatgacacaagtctctgcatctctttatac |
1858094 |
T |
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