View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5845_high_13 (Length: 296)

Name: NF5845_high_13
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5845_high_13
NF5845_high_13
[»] chr7 (7 HSPs)
chr7 (162-285)||(17236298-17236429)
chr7 (162-285)||(8684968-8685097)
chr7 (217-285)||(17278710-17278778)
chr7 (162-213)||(14682750-14682799)
chr7 (162-213)||(25443250-25443300)
chr7 (163-213)||(30474923-30474971)
chr7 (162-213)||(18298073-18298122)
[»] chr3 (8 HSPs)
chr3 (162-285)||(52254513-52254644)
chr3 (162-282)||(33389421-33389548)
chr3 (217-285)||(17514407-17514475)
chr3 (217-285)||(32304950-32305018)
chr3 (225-285)||(42540880-42540940)
chr3 (165-283)||(34817582-34817706)
chr3 (162-213)||(54834183-54834232)
chr3 (162-213)||(52255284-52255333)
[»] chr1 (9 HSPs)
chr1 (162-285)||(24508444-24508575)
chr1 (162-282)||(52750402-52750529)
chr1 (217-285)||(36142424-36142492)
chr1 (217-285)||(47112403-47112471)
chr1 (217-261)||(49652692-49652736)
chr1 (162-213)||(24509218-24509267)
chr1 (162-213)||(31697366-31697415)
chr1 (162-213)||(29021825-29021874)
chr1 (162-213)||(52751327-52751376)
[»] chr4 (9 HSPs)
chr4 (162-285)||(50281914-50282045)
chr4 (162-257)||(44182797-44182899)
chr4 (217-285)||(9087015-9087083)
chr4 (217-285)||(40680760-40680828)
chr4 (180-285)||(13631109-13631222)
chr4 (162-213)||(44183577-44183626)
chr4 (162-213)||(45044623-45044672)
chr4 (162-213)||(50282689-50282738)
chr4 (163-213)||(13630341-13630389)
[»] chr6 (6 HSPs)
chr6 (162-285)||(901658-901787)
chr6 (217-285)||(12261170-12261238)
chr6 (217-285)||(16146389-16146457)
chr6 (217-285)||(20746302-20746370)
chr6 (217-285)||(27129153-27129221)
chr6 (163-213)||(902512-902560)
[»] chr2 (8 HSPs)
chr2 (162-282)||(3093389-3093514)
chr2 (217-285)||(28189757-28189825)
chr2 (217-285)||(8029688-8029756)
chr2 (217-285)||(19298249-19298317)
chr2 (217-277)||(20685941-20686001)
chr2 (217-285)||(40468770-40468842)
chr2 (162-213)||(10708382-10708431)
chr2 (162-213)||(12602346-12602396)
[»] chr8 (2 HSPs)
chr8 (217-285)||(13462416-13462484)
chr8 (215-246)||(9319070-9319101)
[»] chr5 (7 HSPs)
chr5 (217-285)||(6794461-6794529)
chr5 (217-285)||(23082850-23082917)
chr5 (191-285)||(22165862-22165964)
chr5 (162-213)||(38385121-38385170)
chr5 (162-213)||(13824398-13824448)
chr5 (162-213)||(24041990-24042040)
chr5 (1-39)||(37192418-37192456)
[»] scaffold0202 (1 HSPs)
scaffold0202 (165-285)||(21887-22013)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 17236298 - 17236429
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||    
T  17236298 catcaaatctataaacatataatccatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaa 17236397  T
Q  254 tctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||||||||||||||||||||||||||||    
T  17236398 tctccctagaccaaatcaaccaaaatcttcat 17236429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 8684968 - 8685097
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatta--------aaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    ||||||| |||||||||||  ||| |||| ||||||||||||| ||||||||         |||||||||| ||||||||||||||||||||||||||||    
T  8684968 catcaaacctataaacata--atcaattttataactcaatcaacaaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttctcaa 8685065  T
Q  254 tctccctagaccaaatcaaccaaaatcttcat 285  Q
    |||||||| |||||||||||||||||||||||    
T  8685066 tctccctaaaccaaatcaaccaaaatcttcat 8685097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 17278710 - 17278778
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  17278710 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 17278778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 14682799 - 14682750
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  14682799 catcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 14682750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 25443250 - 25443300
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||||| |||  |||||||||||||||| ||||||||||    
T  25443250 catcaaatctataaacata-aattaatttcataactcaatctataaccaatt 25443300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 30474971 - 30474923
Alignment:
Q  163 atcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  30474971 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 30474923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 18298122 - 18298073
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||||| |  | |||||||| ||||||||||||||||||    
T  18298122 catcaaatctataaacataaa--caatttcatatctcaatcaataaccaatt 18298073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 52254513 - 52254644
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||    
T  52254513 catcaaatctataaacatataatccatttcataactcaatcaataaccaattgttccattaaaaaacatccctttcaatctaaacaatacaatttctcaa 52254612  T
Q  254 tctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||||||||||||||||||||||||||||    
T  52254613 tctccctagaccaaatcaaccaaaatcttcat 52254644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 33389421 - 33389548
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaata--accaatta-------aaaaacatccctttcaatctaaacaacacaatttctca 252  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||  || ||||        ||||||||||||||||||| |||||||||||||| |||    
T  33389421 catcaaatctataaacata--atcaatttcataactcaatcaatataactaatttttccattaaaaacatccctttcaatcaaaacaacacaatttttca 33389518  T
Q  253 atctccctagaccaaatcaaccaaaatctt 282  Q
    ||||||||| ||||||||||||||||||||    
T  33389519 atctccctaaaccaaatcaaccaaaatctt 33389548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 17514475 - 17514407
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  17514475 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 17514407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 32305018 - 32304950
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  32305018 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 32304950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 42540940 - 42540880
Alignment:
Q  225 ctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  42540940 ctttcaatctaaacaatacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 42540880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 34817582 - 34817706
Alignment:
Q  165 caaatctataaacatataatccatttcataactcaatcaataaccaatta--------aaaaacatccctttcaatctaaacaacacaatttctcaatct 256  Q
    ||||||||||||||||  ||| ||||||||||| |||||||||||||||         |  |||||| ||| ||||||||||||||||||||||||||||    
T  34817582 caaatctataaacata--atcaatttcataacttaatcaataaccaattttttcattcatgaacatctcttccaatctaaacaacacaatttctcaatct 34817679  T
Q  257 ccctagaccaaatcaaccaaaatcttc 283  Q
    ||||| | |||||||||||||| ||||    
T  34817680 ccctaaagcaaatcaaccaaaaccttc 34817706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 54834183 - 54834232
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  54834183 catcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 54834232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 52255333 - 52255284
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||| |||||||||||||  ||| |||||||||||||||||| ||||||||    
T  52255333 catcatatctataaacata--atcaatttcataactcaatcaacaaccaatt 52255284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 24508444 - 24508575
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  24508444 catcaaatctataaacatataatctatttcataactcaaccaataaccaattttttcattaaaaaacatccctttcaatctaaacaacacaatttctcaa 24508543  T
Q  254 tctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||||||||||||||||||||||||||||    
T  24508544 tctccctagaccaaatcaaccaaaatcttcat 24508575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 52750402 - 52750529
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt---------aaaaaacatccctttcaatctaaacaacacaatttctca 252  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||||||||||||    
T  52750402 catcaaatctataaacata--atcaatttcataactcaatcaataaccaatttttccattaaaaaaacatccctttcaatcaaaacaacacaatttctca 52750499  T
Q  253 atctccctagaccaaatcaaccaaaatctt 282  Q
    |||| |||| ||||||||||||||||||||    
T  52750500 atcttcctaaaccaaatcaaccaaaatctt 52750529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 36142424 - 36142492
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  36142424 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 36142492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 47112403 - 47112471
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||| |||||    
T  47112403 aaacatctctttcaatctaaacaacacaatttctcaatctccctgaagcaaatcaaccaaaatattcat 47112471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 49652692 - 49652736
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctcccta 261  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  49652692 aaacatctctttcaatctaaacaacacaatttctcaatcttccta 49652736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 24509267 - 24509218
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  24509267 catcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 24509218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 31697366 - 31697415
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||| ||||||||||||||||||    
T  31697366 catcaaatctataaacata--atcaatttcatatctcaatcaataaccaatt 31697415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 29021825 - 29021874
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||| |  ||| |||||||||||||||||| ||||||||    
T  29021825 catcaaatctataaacaaa--atcaatttcataactcaatcaacaaccaatt 29021874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 52751376 - 52751327
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||| |  ||| |||||||||||||||||| ||||||||    
T  52751376 catcaaatctataaacaaa--atcaatttcataactcaatcaacaaccaatt 52751327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 50281914 - 50282045
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||        |||  |||||||||||||||||||||| ||||||||||||    
T  50281914 catcaaatctataaacatataatccatttcataactcaatcaataatcaatttttccattaaattacatccctttcaatctaaacaatacaatttctcaa 50282013  T
Q  254 tctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||||||||||||||||||||||||||||    
T  50282014 tctccctagaccaaatcaaccaaaatcttcat 50282045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 44182797 - 44182899
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataacca-------attaaaaaacatccctttcaatctaaacaacacaatttctcaat 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||    
T  44182797 catcaaatctataaacatataatccatttcataactcaatcaataaccatttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaat 44182896  T
Q  255 ctc 257  Q
    |||    
T  44182897 ctc 44182899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 9087083 - 9087015
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  9087083 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaaacaaatcaaccaaaatcttcat 9087015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 40680760 - 40680828
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  40680760 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 40680828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 13631222 - 13631109
Alignment:
Q  180 ataatccatttcataactcaatcaataaccaatta--------aaaaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatca 271  Q
    |||||| ||||||||||| |||||||||||||||         |||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  13631222 ataatctatttcataacttaatcaataaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttatcaatctctctaaaccaaatca 13631123  T
Q  272 accaaaatcttcat 285  Q
     |||||||||||||    
T  13631122 tccaaaatcttcat 13631109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 44183626 - 44183577
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  44183626 catcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 44183577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 45044623 - 45044672
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||| ||||||||||  ||| |||||||||||||||||||||||||||    
T  45044623 catcaaatatataaacata--atcaatttcataactcaatcaataaccaatt 45044672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 50282738 - 50282689
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  50282738 catcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 50282689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 13630341 - 13630389
Alignment:
Q  163 atcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  13630341 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 13630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 901658 - 901787
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||    
T  901658 catcaaatctataaacata--atctatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaacacaatttatcaa 901755  T
Q  254 tctccctagaccaaatcaaccaaaatcttcat 285  Q
    |||| ||| |||||||||||||||||||||||    
T  901756 tctctctaaaccaaatcaaccaaaatcttcat 901787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 12261238 - 12261170
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  12261238 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 12261170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 16146389 - 16146457
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  16146389 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 16146457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 20746370 - 20746302
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||    
T  20746370 aaacatctctttcaatctaaacaacacaatttctcaatcttcctaaagcaaatcaaccaaaatcttcat 20746302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 27129153 - 27129221
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||    
T  27129153 aaacatctctttcaatctaaacatcacaatttttcaatctccctaaagcaaatcaaccaaaatcttcat 27129221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 902560 - 902512
Alignment:
Q  163 atcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    ||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  902560 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 902512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 3093389 - 3093514
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaa 253  Q
    |||||||||||||||||||  |   |||||||||||||||||||||||||||        |||||| ||||||||||||| |||||||||||||| ||||    
T  3093389 catcaaatctataaacataata---atttcataactcaatcaataaccaatttttccattaaaaaatatccctttcaatcaaaacaacacaatttatcaa 3093485  T
Q  254 tctccctagaccaaatcaaccaaaatctt 282  Q
    |||||||| ||||||||||||||||||||    
T  3093486 tctccctaaaccaaatcaaccaaaatctt 3093514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 28189757 - 28189825
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  28189757 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 28189825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 8029756 - 8029688
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||| |||||||||||||||||||||| || | |||||||||||||||||||||    
T  8029756 aaacatctctttcaatctatacaacacaatttctcaatctccataaagcaaatcaaccaaaatcttcat 8029688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 19298317 - 19298249
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||    
T  19298317 aaacatctctttcaatctacacaacacaatttctcaatcttcctaaaacaaatcaaccaaaatcttcat 19298249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 20685941 - 20686001
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaa 277  Q
    |||||||  |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  20685941 aaacatctatttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaa 20686001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 40468842 - 40468770
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccc----tagaccaaatcaaccaaaatcttcat 285  Q
    |||||||  ||||||||||||||||||||||||||||||||||    || | |||||||||||||||||||||    
T  40468842 aaacatctatttcaatctaaacaacacaatttctcaatctccctaattaaagcaaatcaaccaaaatcttcat 40468770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 10708382 - 10708431
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  10708382 catcaaatctataaacata--atcaatttcataactcaatcaataaccaatt 10708431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 12602396 - 12602346
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  12602396 catcaaatctataaacat-taatcaatttcatatctcaatcaataaccaatt 12602346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 13462416 - 13462484
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  13462416 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 13462484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 9319101 - 9319070
Alignment:
Q  215 aaaaacatccctttcaatctaaacaacacaat 246  Q
    ||||||||||||||||||||||||||||||||    
T  9319101 aaaaacatccctttcaatctaaacaacacaat 9319070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 6794529 - 6794461
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  6794529 aaacatctctttcaatctaaacaacacaatttctcaatctccctaaaacaaatcaaccaaaatcttcat 6794461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 23082850 - 23082917
Alignment:
Q  217 aaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  23082850 aaacatctctttcaatctaaacaacacaatttctcaa-ctccctaaagcaaatcaaccaaaatcttcat 23082917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 22165964 - 22165862
Alignment:
Q  191 cataactcaatcaataaccaatt--------aaaaaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaatcaaccaaaatctt 282  Q
    |||||||||||||||||||||||        |||||||||| |||||| |  ||||||||||| |||||||||||| || | ||||||||||||||||||    
T  22165964 cataactcaatcaataaccaattttccactaaaaaaacatcactttcatttcaaacaacacaaattctcaatctccataaatcaaatcaaccaaaatctt 22165865  T
Q  283 cat 285  Q
    |||    
T  22165864 cat 22165862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 38385121 - 38385170
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  38385121 catcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 38385170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 13824448 - 13824398
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  13824448 catcaaatctataaacat-taatcaatttcatatctccatcaataaccaatt 13824398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 24041990 - 24042040
Alignment:
Q  162 catcaaatctataaacatataatccatttcataactcaatcaataaccaatt 213  Q
    |||||||||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  24041990 catcaaatctataaacat-taatcaatttcatatctccatcaataaccaatt 24042040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37192456 - 37192418
Alignment:
Q  1 ttgagtactttatatttatctctgttgcctgttatggtc 39  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  37192456 ttgagtactttatatttatctctgttacctgttttggtc 37192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 22013 - 21887
Alignment:
Q  165 caaatctataaacatataatccatttcataactcaatcaataaccaatta--------aaaaacatccctttcaatctaaacaacacaatttctcaatct 256  Q
    ||||||||||||||||  ||| ||||||||||| |||||||||||||||         | ||||||| ||||||||||||||||| ||||||||||||||    
T  22013 caaatctataaacata--atcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaactcaatttctcaatct 21916  T
Q  257 ccctagaccaaatcaaccaaaatcttcat 285  Q
    ||||| | |||||||||||||| ||||||    
T  21915 ccctaaagcaaatcaaccaaaaccttcat 21887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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